Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22075

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22070 and AMB_RS22075 are separated by 13 nucleotidesAMB_RS22075 and AMB_RS23810 are separated by 13 nucleotidesAMB_RS23810 and AMB_RS22080 are separated by 2 nucleotides AMB_RS22070: AMB_RS22070 - cytochrome-c oxidase, cbb3-type subunit I, at 4,765,943 to 4,767,397 _RS22070 AMB_RS22075: AMB_RS22075 - cytochrome-c oxidase, cbb3-type subunit II, at 4,767,411 to 4,768,133 _RS22075 AMB_RS23810: AMB_RS23810 - CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone, at 4,768,147 to 4,768,308 _RS23810 AMB_RS22080: AMB_RS22080 - cytochrome-c oxidase, cbb3-type subunit III, at 4,768,311 to 4,769,171 _RS22080 Position (kb) 4767 4768 4769Strain fitness (log2 ratio) -2 -1 0 1at 4768.131 kb on + strandat 4768.131 kb on + strandat 4768.131 kb on + strandat 4768.131 kb on + strandat 4768.306 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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4,768,131 + -1.1
4,768,131 + -0.4
4,768,131 + -0.8
4,768,131 + -0.4
4,768,306 + -1.8

Or see this region's nucleotide sequence