Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20575

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20570 and AMB_RS20575 are separated by 185 nucleotidesAMB_RS20575 and AMB_RS20580 are separated by 36 nucleotides AMB_RS20570: AMB_RS20570 - 3-isopropylmalate dehydrogenase, at 4,469,458 to 4,470,567 _RS20570 AMB_RS20575: AMB_RS20575 - ribosome-binding factor A, at 4,470,753 to 4,471,181 _RS20575 AMB_RS20580: AMB_RS20580 - translation initiation factor IF-2, at 4,471,218 to 4,473,836 _RS20580 Position (kb) 4470 4471 4472Strain fitness (log2 ratio) -1 0 1at 4470.754 kb on + strandat 4470.754 kb on + strandat 4471.219 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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4,470,754 + +1.1
4,470,754 + -0.5
4,471,219 + -1.1

Or see this region's nucleotide sequence