Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20400

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20390 and AMB_RS20395 are separated by 299 nucleotidesAMB_RS20395 and AMB_RS20400 are separated by 20 nucleotidesAMB_RS20400 and AMB_RS20405 overlap by 4 nucleotides AMB_RS20390: AMB_RS20390 - hypothetical protein, at 4,437,881 to 4,438,669 _RS20390 AMB_RS20395: AMB_RS20395 - hypothetical protein, at 4,438,969 to 4,439,526 _RS20395 AMB_RS20400: AMB_RS20400 - hypothetical protein, at 4,439,547 to 4,439,843 _RS20400 AMB_RS20405: AMB_RS20405 - ATPase, at 4,439,840 to 4,440,589 _RS20405 Position (kb) 4439 4440Strain fitness (log2 ratio) -3 -2 -1 0 1at 4438.704 kb on + strandat 4438.704 kb on + strandat 4438.705 kb on - strandat 4438.827 kb on + strandat 4438.828 kb on - strandat 4438.828 kb on - strandat 4438.828 kb on - strandat 4438.828 kb on - strandat 4438.998 kb on + strandat 4438.999 kb on - strandat 4439.006 kb on - strandat 4439.062 kb on + strand, within AMB_RS20395at 4439.063 kb on - strand, within AMB_RS20395at 4439.065 kb on + strand, within AMB_RS20395at 4439.065 kb on + strand, within AMB_RS20395at 4439.066 kb on - strand, within AMB_RS20395at 4439.066 kb on - strand, within AMB_RS20395at 4439.066 kb on - strand, within AMB_RS20395at 4439.066 kb on - strand, within AMB_RS20395at 4439.083 kb on + strand, within AMB_RS20395at 4439.084 kb on - strand, within AMB_RS20395at 4439.260 kb on + strand, within AMB_RS20395at 4439.260 kb on + strand, within AMB_RS20395at 4439.260 kb on + strand, within AMB_RS20395at 4439.260 kb on + strand, within AMB_RS20395at 4439.260 kb on + strand, within AMB_RS20395at 4439.260 kb on + strand, within AMB_RS20395at 4439.261 kb on - strand, within AMB_RS20395at 4439.261 kb on - strand, within AMB_RS20395at 4439.261 kb on - strand, within AMB_RS20395at 4439.261 kb on - strand, within AMB_RS20395at 4439.261 kb on - strand, within AMB_RS20395at 4439.261 kb on - strand, within AMB_RS20395at 4439.261 kb on - strand, within AMB_RS20395at 4439.262 kb on + strand, within AMB_RS20395at 4439.262 kb on + strand, within AMB_RS20395at 4439.263 kb on - strand, within AMB_RS20395at 4439.263 kb on - strand, within AMB_RS20395at 4439.381 kb on + strand, within AMB_RS20395at 4439.381 kb on + strand, within AMB_RS20395at 4439.381 kb on + strand, within AMB_RS20395at 4439.382 kb on - strand, within AMB_RS20395at 4439.382 kb on - strand, within AMB_RS20395at 4439.382 kb on - strand, within AMB_RS20395at 4439.382 kb on - strand, within AMB_RS20395at 4439.382 kb on - strand, within AMB_RS20395at 4439.382 kb on - strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.383 kb on + strand, within AMB_RS20395at 4439.384 kb on - strand, within AMB_RS20395at 4439.384 kb on - strand, within AMB_RS20395at 4439.384 kb on - strand, within AMB_RS20395at 4439.384 kb on - strand, within AMB_RS20395at 4439.384 kb on - strand, within AMB_RS20395at 4439.384 kb on - strand, within AMB_RS20395at 4439.384 kb on - strand, within AMB_RS20395at 4439.569 kb on + strandat 4439.569 kb on + strandat 4439.569 kb on + strandat 4439.609 kb on + strand, within AMB_RS20400at 4439.609 kb on + strand, within AMB_RS20400at 4439.609 kb on + strand, within AMB_RS20400at 4439.609 kb on + strand, within AMB_RS20400at 4439.609 kb on + strand, within AMB_RS20400at 4439.609 kb on + strand, within AMB_RS20400at 4439.610 kb on - strand, within AMB_RS20400at 4439.610 kb on - strand, within AMB_RS20400at 4439.610 kb on - strand, within AMB_RS20400at 4439.613 kb on + strand, within AMB_RS20400at 4439.613 kb on + strand, within AMB_RS20400at 4439.613 kb on + strand, within AMB_RS20400at 4439.613 kb on + strand, within AMB_RS20400at 4439.613 kb on + strand, within AMB_RS20400at 4439.614 kb on - strand, within AMB_RS20400at 4439.614 kb on - strand, within AMB_RS20400at 4439.614 kb on - strand, within AMB_RS20400at 4439.614 kb on - strand, within AMB_RS20400at 4439.721 kb on + strand, within AMB_RS20400at 4439.742 kb on - strand, within AMB_RS20400at 4439.760 kb on + strand, within AMB_RS20400at 4439.760 kb on + strand, within AMB_RS20400at 4439.760 kb on + strand, within AMB_RS20400at 4439.760 kb on + strand, within AMB_RS20400at 4439.760 kb on + strand, within AMB_RS20400at 4439.761 kb on - strand, within AMB_RS20400at 4439.761 kb on - strand, within AMB_RS20400at 4439.776 kb on + strand, within AMB_RS20400at 4439.776 kb on + strand, within AMB_RS20400at 4439.776 kb on + strand, within AMB_RS20400at 4439.777 kb on - strand, within AMB_RS20400at 4439.777 kb on - strand, within AMB_RS20400at 4439.777 kb on - strand, within AMB_RS20400at 4439.839 kb on + strandat 4439.839 kb on + strandat 4439.839 kb on + strandat 4439.839 kb on + strandat 4439.839 kb on + strandat 4439.840 kb on - strandat 4439.840 kb on - strandat 4439.840 kb on - strandat 4439.840 kb on - strandat 4439.840 kb on - strandat 4439.840 kb on - strandat 4440.197 kb on + strand, within AMB_RS20405at 4440.317 kb on + strand, within AMB_RS20405at 4440.317 kb on + strand, within AMB_RS20405at 4440.317 kb on + strand, within AMB_RS20405at 4440.318 kb on - strand, within AMB_RS20405at 4440.318 kb on - strand, within AMB_RS20405at 4440.802 kb on + strandat 4440.802 kb on + strandat 4440.802 kb on + strandat 4440.803 kb on - strandat 4440.803 kb on - strandat 4440.817 kb on + strandat 4440.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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4,438,704 + +0.9
4,438,704 + -0.4
4,438,705 - -0.1
4,438,827 + -0.4
4,438,828 - +1.1
4,438,828 - +0.5
4,438,828 - -0.3
4,438,828 - -1.5
4,438,998 + -0.8
4,438,999 - +0.4
4,439,006 - +0.8
4,439,062 + AMB_RS20395 0.17 -0.4
4,439,063 - AMB_RS20395 0.17 +0.1
4,439,065 + AMB_RS20395 0.17 -2.2
4,439,065 + AMB_RS20395 0.17 -1.9
4,439,066 - AMB_RS20395 0.17 -1.7
4,439,066 - AMB_RS20395 0.17 -0.1
4,439,066 - AMB_RS20395 0.17 +0.3
4,439,066 - AMB_RS20395 0.17 +0.9
4,439,083 + AMB_RS20395 0.20 -0.5
4,439,084 - AMB_RS20395 0.21 +0.4
4,439,260 + AMB_RS20395 0.52 -1.3
4,439,260 + AMB_RS20395 0.52 -0.5
4,439,260 + AMB_RS20395 0.52 +0.2
4,439,260 + AMB_RS20395 0.52 -0.8
4,439,260 + AMB_RS20395 0.52 -1.5
4,439,260 + AMB_RS20395 0.52 +0.2
4,439,261 - AMB_RS20395 0.52 -0.0
4,439,261 - AMB_RS20395 0.52 -1.5
4,439,261 - AMB_RS20395 0.52 -0.5
4,439,261 - AMB_RS20395 0.52 -1.5
4,439,261 - AMB_RS20395 0.52 -0.5
4,439,261 - AMB_RS20395 0.52 -2.9
4,439,261 - AMB_RS20395 0.52 -1.9
4,439,262 + AMB_RS20395 0.53 -0.5
4,439,262 + AMB_RS20395 0.53 -0.0
4,439,263 - AMB_RS20395 0.53 -0.1
4,439,263 - AMB_RS20395 0.53 -0.0
4,439,381 + AMB_RS20395 0.74 -2.1
4,439,381 + AMB_RS20395 0.74 -3.1
4,439,381 + AMB_RS20395 0.74 -0.4
4,439,382 - AMB_RS20395 0.74 -0.5
4,439,382 - AMB_RS20395 0.74 -0.2
4,439,382 - AMB_RS20395 0.74 -2.3
4,439,382 - AMB_RS20395 0.74 +0.1
4,439,382 - AMB_RS20395 0.74 -0.1
4,439,382 - AMB_RS20395 0.74 -0.2
4,439,383 + AMB_RS20395 0.74 +0.2
4,439,383 + AMB_RS20395 0.74 -1.7
4,439,383 + AMB_RS20395 0.74 -0.6
4,439,383 + AMB_RS20395 0.74 +0.0
4,439,383 + AMB_RS20395 0.74 -0.2
4,439,383 + AMB_RS20395 0.74 -2.2
4,439,383 + AMB_RS20395 0.74 -1.1
4,439,383 + AMB_RS20395 0.74 -1.5
4,439,384 - AMB_RS20395 0.74 +0.2
4,439,384 - AMB_RS20395 0.74 -0.2
4,439,384 - AMB_RS20395 0.74 +0.1
4,439,384 - AMB_RS20395 0.74 -1.7
4,439,384 - AMB_RS20395 0.74 +0.4
4,439,384 - AMB_RS20395 0.74 +0.3
4,439,384 - AMB_RS20395 0.74 -0.5
4,439,569 + +0.5
4,439,569 + +0.5
4,439,569 + +0.3
4,439,609 + AMB_RS20400 0.21 -1.7
4,439,609 + AMB_RS20400 0.21 -3.3
4,439,609 + AMB_RS20400 0.21 -2.5
4,439,609 + AMB_RS20400 0.21 -0.5
4,439,609 + AMB_RS20400 0.21 +0.3
4,439,609 + AMB_RS20400 0.21 +0.2
4,439,610 - AMB_RS20400 0.21 -0.3
4,439,610 - AMB_RS20400 0.21 -0.5
4,439,610 - AMB_RS20400 0.21 -0.1
4,439,613 + AMB_RS20400 0.22 -2.6
4,439,613 + AMB_RS20400 0.22 -1.7
4,439,613 + AMB_RS20400 0.22 -1.1
4,439,613 + AMB_RS20400 0.22 -0.3
4,439,613 + AMB_RS20400 0.22 +1.5
4,439,614 - AMB_RS20400 0.23 -0.1
4,439,614 - AMB_RS20400 0.23 -0.5
4,439,614 - AMB_RS20400 0.23 -1.5
4,439,614 - AMB_RS20400 0.23 +0.4
4,439,721 + AMB_RS20400 0.59 -2.9
4,439,742 - AMB_RS20400 0.66 -1.5
4,439,760 + AMB_RS20400 0.72 -2.5
4,439,760 + AMB_RS20400 0.72 +0.3
4,439,760 + AMB_RS20400 0.72 -0.1
4,439,760 + AMB_RS20400 0.72 -0.5
4,439,760 + AMB_RS20400 0.72 +0.4
4,439,761 - AMB_RS20400 0.72 -0.3
4,439,761 - AMB_RS20400 0.72 -0.5
4,439,776 + AMB_RS20400 0.77 +0.6
4,439,776 + AMB_RS20400 0.77 -0.8
4,439,776 + AMB_RS20400 0.77 +1.3
4,439,777 - AMB_RS20400 0.77 -1.8
4,439,777 - AMB_RS20400 0.77 +0.3
4,439,777 - AMB_RS20400 0.77 -0.6
4,439,839 + -0.1
4,439,839 + -0.5
4,439,839 + -1.9
4,439,839 + -1.1
4,439,839 + +0.6
4,439,840 - -1.7
4,439,840 - +0.2
4,439,840 - -0.5
4,439,840 - -0.5
4,439,840 - -1.7
4,439,840 - -0.2
4,440,197 + AMB_RS20405 0.48 +0.3
4,440,317 + AMB_RS20405 0.64 -2.2
4,440,317 + AMB_RS20405 0.64 -0.8
4,440,317 + AMB_RS20405 0.64 +0.3
4,440,318 - AMB_RS20405 0.64 -1.8
4,440,318 - AMB_RS20405 0.64 -0.8
4,440,802 + -0.1
4,440,802 + +0.3
4,440,802 + +0.1
4,440,803 - -0.3
4,440,803 - -0.5
4,440,817 + +0.3
4,440,842 - -3.3

Or see this region's nucleotide sequence