Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20350

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20340 and AMB_RS20345 are separated by 6 nucleotidesAMB_RS20345 and AMB_RS20350 are separated by 2 nucleotidesAMB_RS20350 and AMB_RS20355 are separated by 187 nucleotides AMB_RS20340: AMB_RS20340 - asparagine synthase (glutamine-hydrolyzing), at 4,428,421 to 4,430,328 _RS20340 AMB_RS20345: AMB_RS20345 - 7-cyano-7-deazaguanine synthase, at 4,430,335 to 4,431,018 _RS20345 AMB_RS20350: AMB_RS20350 - aspartate 1-decarboxylase, at 4,431,021 to 4,431,563 _RS20350 AMB_RS20355: AMB_RS20355 - glutamate--cysteine ligase, at 4,431,751 to 4,433,118 _RS20355 Position (kb) 4431 4432Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4430.345 kb on + strandat 4430.346 kb on - strandat 4430.346 kb on - strandat 4430.346 kb on - strandat 4430.346 kb on - strandat 4430.444 kb on + strand, within AMB_RS20345at 4430.444 kb on + strand, within AMB_RS20345at 4430.444 kb on + strand, within AMB_RS20345at 4430.601 kb on + strand, within AMB_RS20345at 4430.601 kb on + strand, within AMB_RS20345at 4430.601 kb on + strand, within AMB_RS20345at 4430.601 kb on + strand, within AMB_RS20345at 4430.602 kb on - strand, within AMB_RS20345at 4430.602 kb on - strand, within AMB_RS20345at 4430.602 kb on - strand, within AMB_RS20345at 4430.633 kb on + strand, within AMB_RS20345at 4430.732 kb on + strand, within AMB_RS20345at 4430.732 kb on + strand, within AMB_RS20345at 4430.732 kb on + strand, within AMB_RS20345at 4430.732 kb on + strand, within AMB_RS20345at 4430.732 kb on + strand, within AMB_RS20345at 4430.732 kb on + strand, within AMB_RS20345at 4430.733 kb on - strand, within AMB_RS20345at 4430.733 kb on - strand, within AMB_RS20345at 4430.733 kb on - strand, within AMB_RS20345at 4430.733 kb on - strand, within AMB_RS20345at 4431.022 kb on + strandat 4431.022 kb on + strandat 4431.022 kb on + strandat 4431.022 kb on + strandat 4431.023 kb on - strandat 4431.107 kb on + strand, within AMB_RS20350at 4431.176 kb on - strand, within AMB_RS20350at 4431.205 kb on + strand, within AMB_RS20350at 4431.205 kb on + strand, within AMB_RS20350at 4431.206 kb on - strand, within AMB_RS20350at 4431.206 kb on - strand, within AMB_RS20350at 4431.206 kb on - strand, within AMB_RS20350at 4431.208 kb on + strand, within AMB_RS20350at 4431.208 kb on + strand, within AMB_RS20350at 4431.209 kb on - strand, within AMB_RS20350at 4431.209 kb on - strand, within AMB_RS20350at 4431.209 kb on - strand, within AMB_RS20350at 4431.209 kb on - strand, within AMB_RS20350at 4431.209 kb on - strand, within AMB_RS20350at 4431.209 kb on - strand, within AMB_RS20350at 4431.209 kb on - strand, within AMB_RS20350at 4431.268 kb on + strand, within AMB_RS20350at 4431.268 kb on + strand, within AMB_RS20350at 4431.268 kb on + strand, within AMB_RS20350at 4431.268 kb on + strand, within AMB_RS20350at 4431.269 kb on - strand, within AMB_RS20350at 4431.269 kb on - strand, within AMB_RS20350at 4431.269 kb on - strand, within AMB_RS20350at 4431.269 kb on - strand, within AMB_RS20350at 4431.269 kb on - strand, within AMB_RS20350at 4431.394 kb on + strand, within AMB_RS20350at 4431.394 kb on + strand, within AMB_RS20350at 4431.394 kb on + strand, within AMB_RS20350at 4431.394 kb on + strand, within AMB_RS20350at 4431.394 kb on + strand, within AMB_RS20350at 4431.394 kb on + strand, within AMB_RS20350at 4431.394 kb on + strand, within AMB_RS20350at 4431.394 kb on + strand, within AMB_RS20350at 4431.395 kb on - strand, within AMB_RS20350at 4431.395 kb on - strand, within AMB_RS20350at 4431.395 kb on - strand, within AMB_RS20350at 4431.395 kb on - strand, within AMB_RS20350at 4431.395 kb on - strand, within AMB_RS20350at 4431.395 kb on - strand, within AMB_RS20350at 4431.395 kb on - strand, within AMB_RS20350at 4431.395 kb on - strand, within AMB_RS20350at 4431.395 kb on - strand, within AMB_RS20350at 4431.395 kb on - strand, within AMB_RS20350at 4431.451 kb on + strand, within AMB_RS20350at 4431.451 kb on + strand, within AMB_RS20350at 4431.451 kb on + strand, within AMB_RS20350at 4431.452 kb on - strand, within AMB_RS20350at 4431.452 kb on - strand, within AMB_RS20350at 4431.452 kb on - strand, within AMB_RS20350at 4431.452 kb on - strand, within AMB_RS20350at 4431.452 kb on - strand, within AMB_RS20350at 4431.503 kb on - strand, within AMB_RS20350at 4431.503 kb on - strand, within AMB_RS20350at 4431.503 kb on - strand, within AMB_RS20350at 4431.602 kb on + strandat 4431.602 kb on + strandat 4431.603 kb on - strandat 4431.603 kb on - strandat 4431.633 kb on + strandat 4431.633 kb on + strandat 4431.633 kb on + strandat 4431.633 kb on + strandat 4431.633 kb on + strandat 4431.634 kb on - strandat 4431.634 kb on - strandat 4431.735 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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4,430,345 + -1.1
4,430,346 - -0.1
4,430,346 - -0.1
4,430,346 - -1.3
4,430,346 - -0.8
4,430,444 + AMB_RS20345 0.16 +0.7
4,430,444 + AMB_RS20345 0.16 +0.3
4,430,444 + AMB_RS20345 0.16 -0.1
4,430,601 + AMB_RS20345 0.39 -0.5
4,430,601 + AMB_RS20345 0.39 -0.4
4,430,601 + AMB_RS20345 0.39 +0.1
4,430,601 + AMB_RS20345 0.39 +0.8
4,430,602 - AMB_RS20345 0.39 -1.2
4,430,602 - AMB_RS20345 0.39 -0.7
4,430,602 - AMB_RS20345 0.39 -0.4
4,430,633 + AMB_RS20345 0.44 -0.7
4,430,732 + AMB_RS20345 0.58 -0.3
4,430,732 + AMB_RS20345 0.58 +0.6
4,430,732 + AMB_RS20345 0.58 -0.2
4,430,732 + AMB_RS20345 0.58 -0.0
4,430,732 + AMB_RS20345 0.58 +0.2
4,430,732 + AMB_RS20345 0.58 -1.1
4,430,733 - AMB_RS20345 0.58 +1.0
4,430,733 - AMB_RS20345 0.58 +0.3
4,430,733 - AMB_RS20345 0.58 -2.7
4,430,733 - AMB_RS20345 0.58 -0.5
4,431,022 + +0.2
4,431,022 + -1.3
4,431,022 + -2.5
4,431,022 + -0.2
4,431,023 - -0.5
4,431,107 + AMB_RS20350 0.16 -2.9
4,431,176 - AMB_RS20350 0.29 -2.9
4,431,205 + AMB_RS20350 0.34 -1.8
4,431,205 + AMB_RS20350 0.34 -2.4
4,431,206 - AMB_RS20350 0.34 -3.9
4,431,206 - AMB_RS20350 0.34 -3.3
4,431,206 - AMB_RS20350 0.34 -2.2
4,431,208 + AMB_RS20350 0.34 -2.5
4,431,208 + AMB_RS20350 0.34 -2.1
4,431,209 - AMB_RS20350 0.35 -1.5
4,431,209 - AMB_RS20350 0.35 -3.8
4,431,209 - AMB_RS20350 0.35 -1.8
4,431,209 - AMB_RS20350 0.35 -3.1
4,431,209 - AMB_RS20350 0.35 -3.3
4,431,209 - AMB_RS20350 0.35 -2.7
4,431,209 - AMB_RS20350 0.35 -0.8
4,431,268 + AMB_RS20350 0.45 -2.7
4,431,268 + AMB_RS20350 0.45 -2.5
4,431,268 + AMB_RS20350 0.45 -1.8
4,431,268 + AMB_RS20350 0.45 -1.7
4,431,269 - AMB_RS20350 0.46 -3.5
4,431,269 - AMB_RS20350 0.46 -1.3
4,431,269 - AMB_RS20350 0.46 -1.9
4,431,269 - AMB_RS20350 0.46 -5.6
4,431,269 - AMB_RS20350 0.46 -3.2
4,431,394 + AMB_RS20350 0.69 -4.4
4,431,394 + AMB_RS20350 0.69 -1.5
4,431,394 + AMB_RS20350 0.69 -2.4
4,431,394 + AMB_RS20350 0.69 -2.2
4,431,394 + AMB_RS20350 0.69 -2.6
4,431,394 + AMB_RS20350 0.69 -2.4
4,431,394 + AMB_RS20350 0.69 -3.7
4,431,394 + AMB_RS20350 0.69 -2.6
4,431,395 - AMB_RS20350 0.69 -3.0
4,431,395 - AMB_RS20350 0.69 -3.3
4,431,395 - AMB_RS20350 0.69 -2.6
4,431,395 - AMB_RS20350 0.69 -2.3
4,431,395 - AMB_RS20350 0.69 -4.3
4,431,395 - AMB_RS20350 0.69 -2.3
4,431,395 - AMB_RS20350 0.69 -2.8
4,431,395 - AMB_RS20350 0.69 -1.9
4,431,395 - AMB_RS20350 0.69 -4.4
4,431,395 - AMB_RS20350 0.69 -2.2
4,431,451 + AMB_RS20350 0.79 -2.8
4,431,451 + AMB_RS20350 0.79 -4.9
4,431,451 + AMB_RS20350 0.79 -4.7
4,431,452 - AMB_RS20350 0.79 +0.6
4,431,452 - AMB_RS20350 0.79 -2.6
4,431,452 - AMB_RS20350 0.79 -4.0
4,431,452 - AMB_RS20350 0.79 -4.4
4,431,452 - AMB_RS20350 0.79 -2.1
4,431,503 - AMB_RS20350 0.89 -3.7
4,431,503 - AMB_RS20350 0.89 -3.5
4,431,503 - AMB_RS20350 0.89 -3.0
4,431,602 + -1.9
4,431,602 + -2.8
4,431,603 - +0.0
4,431,603 - -0.1
4,431,633 + -6.1
4,431,633 + +0.6
4,431,633 + -2.7
4,431,633 + -3.6
4,431,633 + -2.1
4,431,634 - -3.3
4,431,634 - +0.1
4,431,735 + -1.3

Or see this region's nucleotide sequence