Experiment: 30_an_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS18935 and AMB_RS18940 overlap by 4 nucleotides AMB_RS18940 and AMB_RS18945 are separated by 9 nucleotides AMB_RS18945 and AMB_RS18950 are separated by 3 nucleotides
AMB_RS18935: AMB_RS18935 - Flp pilus assembly protein, secretin CpaC, at 4,115,934 to 4,117,421
_RS18935
AMB_RS18940: AMB_RS18940 - type IV pili component, at 4,117,418 to 4,118,128
_RS18940
AMB_RS18945: AMB_RS18945 - Flp pilus assembly protein, ATPase CpaE, at 4,118,138 to 4,119,319
_RS18945
AMB_RS18950: AMB_RS18950 - CpaF family protein, at 4,119,323 to 4,120,711
_RS18950
Position (kb) 4118
4119
4120 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4117.243 kb on - strand, within AMB_RS18935 at 4117.347 kb on + strand at 4117.347 kb on + strand at 4117.347 kb on + strand at 4117.347 kb on + strand at 4117.347 kb on + strand at 4117.347 kb on + strand at 4117.347 kb on + strand at 4117.347 kb on + strand at 4117.347 kb on + strand at 4117.347 kb on + strand at 4117.347 kb on + strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.348 kb on - strand at 4117.349 kb on + strand at 4117.349 kb on + strand at 4117.350 kb on - strand at 4117.880 kb on + strand, within AMB_RS18940 at 4117.880 kb on + strand, within AMB_RS18940 at 4117.881 kb on - strand, within AMB_RS18940 at 4117.881 kb on - strand, within AMB_RS18940 at 4117.881 kb on - strand, within AMB_RS18940 at 4117.881 kb on - strand, within AMB_RS18940 at 4117.881 kb on - strand, within AMB_RS18940 at 4117.881 kb on - strand, within AMB_RS18940 at 4117.881 kb on - strand, within AMB_RS18940 at 4117.881 kb on - strand, within AMB_RS18940 at 4118.022 kb on - strand, within AMB_RS18940 at 4118.085 kb on + strand at 4118.086 kb on - strand at 4118.126 kb on + strand at 4118.127 kb on - strand at 4118.774 kb on + strand, within AMB_RS18945 at 4119.317 kb on + strand at 4119.317 kb on + strand at 4119.318 kb on - strand at 4119.318 kb on - strand at 4119.719 kb on + strand, within AMB_RS18950 at 4119.720 kb on - strand, within AMB_RS18950 at 4119.720 kb on - strand, within AMB_RS18950 at 4119.720 kb on - strand, within AMB_RS18950 at 4119.720 kb on - strand, within AMB_RS18950 at 4119.720 kb on - strand, within AMB_RS18950 at 4120.095 kb on - strand, within AMB_RS18950 at 4120.095 kb on - strand, within AMB_RS18950 at 4120.319 kb on - strand, within AMB_RS18950
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_1 remove 4,117,243 - AMB_RS18935 0.88 -1.5 4,117,347 + +0.1 4,117,347 + -0.8 4,117,347 + +0.3 4,117,347 + -1.1 4,117,347 + +0.2 4,117,347 + +0.2 4,117,347 + -1.1 4,117,347 + +0.8 4,117,347 + -0.2 4,117,347 + +0.8 4,117,347 + -2.1 4,117,348 - +1.1 4,117,348 - -2.3 4,117,348 - -1.6 4,117,348 - -0.6 4,117,348 - -3.0 4,117,348 - -0.3 4,117,348 - +0.2 4,117,348 - -0.3 4,117,348 - +0.0 4,117,348 - -1.5 4,117,348 - -0.5 4,117,348 - -1.2 4,117,348 - +1.2 4,117,348 - -1.5 4,117,348 - +0.2 4,117,348 - -1.5 4,117,348 - -1.3 4,117,348 - -2.0 4,117,349 + -1.5 4,117,349 + -0.4 4,117,350 - -4.4 4,117,880 + AMB_RS18940 0.65 +0.4 4,117,880 + AMB_RS18940 0.65 +0.2 4,117,881 - AMB_RS18940 0.65 +0.0 4,117,881 - AMB_RS18940 0.65 -1.3 4,117,881 - AMB_RS18940 0.65 -0.6 4,117,881 - AMB_RS18940 0.65 -3.5 4,117,881 - AMB_RS18940 0.65 +0.4 4,117,881 - AMB_RS18940 0.65 -0.2 4,117,881 - AMB_RS18940 0.65 -1.1 4,117,881 - AMB_RS18940 0.65 -1.4 4,118,022 - AMB_RS18940 0.85 +0.1 4,118,085 + +0.2 4,118,086 - -2.7 4,118,126 + -0.4 4,118,127 - -1.5 4,118,774 + AMB_RS18945 0.54 +0.6 4,119,317 + -0.0 4,119,317 + -1.7 4,119,318 - -1.5 4,119,318 - +0.2 4,119,719 + AMB_RS18950 0.29 -1.1 4,119,720 - AMB_RS18950 0.29 -0.2 4,119,720 - AMB_RS18950 0.29 -0.3 4,119,720 - AMB_RS18950 0.29 -2.4 4,119,720 - AMB_RS18950 0.29 +0.5 4,119,720 - AMB_RS18950 0.29 +1.2 4,120,095 - AMB_RS18950 0.56 -0.8 4,120,095 - AMB_RS18950 0.56 +0.1 4,120,319 - AMB_RS18950 0.72 +0.1
Or see this region's nucleotide sequence