Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08500

Experiment: 30_an_initial_1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_initial_1
1,818,141	+		AMB_RS08495	0.47	+0.1
1,818,258	+		AMB_RS08495	0.55	-1.2
1,818,258	+		AMB_RS08495	0.55	-0.8
1,818,258	+		AMB_RS08495	0.55	-0.6
1,818,258	+		AMB_RS08495	0.55	-0.7
1,818,258	+		AMB_RS08495	0.55	-0.2
1,818,258	+		AMB_RS08495	0.55	+0.1
1,818,258	+		AMB_RS08495	0.55	-1.1
1,818,258	+		AMB_RS08495	0.55	-0.5
1,818,258	+		AMB_RS08495	0.55	-0.5
1,818,258	+		AMB_RS08495	0.55	-1.3
1,818,258	+		AMB_RS08495	0.55	-1.7
1,818,258	+		AMB_RS08495	0.55	-1.9
1,818,259	-		AMB_RS08495	0.55	-0.5
1,818,259	-		AMB_RS08495	0.55	-0.0
1,818,259	-		AMB_RS08495	0.55	-0.6
1,818,259	-		AMB_RS08495	0.55	-2.1
1,818,259	-		AMB_RS08495	0.55	-0.5
1,818,259	-		AMB_RS08495	0.55	-3.6
1,818,282	+		AMB_RS08495	0.57	+0.4
1,818,282	+		AMB_RS08495	0.57	-0.4
1,818,282	+		AMB_RS08495	0.57	+0.4
1,818,282	+		AMB_RS08495	0.57	-1.9
1,818,282	+		AMB_RS08495	0.57	-1.9
1,818,423	+		AMB_RS08495	0.67	+0.4
1,818,423	+		AMB_RS08495	0.67	-0.9
1,818,447	+		AMB_RS08495	0.69	-0.0
1,818,447	+		AMB_RS08495	0.69	-0.9
1,818,447	+		AMB_RS08495	0.69	-0.4
1,818,510	+		AMB_RS08495	0.73	-0.9
1,818,511	-		AMB_RS08495	0.73	-0.6
1,818,511	-		AMB_RS08495	0.73	-0.1
1,818,511	-		AMB_RS08495	0.73	-1.2
1,818,511	-		AMB_RS08495	0.73	-1.2
1,818,518	+		AMB_RS08495	0.74	-0.3
1,818,518	+		AMB_RS08495	0.74	-0.2
1,818,518	+		AMB_RS08495	0.74	+0.4
1,818,518	+		AMB_RS08495	0.74	-1.4
1,818,518	+		AMB_RS08495	0.74	-0.2
1,818,518	+		AMB_RS08495	0.74	+0.6
1,818,518	+		AMB_RS08495	0.74	-1.9
1,818,518	+		AMB_RS08495	0.74	-1.6
1,818,518	+		AMB_RS08495	0.74	-1.9
1,818,519	-		AMB_RS08495	0.74	+0.7
1,818,519	-		AMB_RS08495	0.74	-1.0
1,818,519	-		AMB_RS08495	0.74	-2.3
1,818,519	-		AMB_RS08495	0.74	-2.5
1,818,519	-		AMB_RS08495	0.74	-0.0
1,818,519	-		AMB_RS08495	0.74	-1.2
1,818,519	-		AMB_RS08495	0.74	-0.8
1,818,519	-		AMB_RS08495	0.74	-0.6
1,818,519	-		AMB_RS08495	0.74	-1.4
1,818,522	+		AMB_RS08495	0.74	-1.6
1,818,522	+		AMB_RS08495	0.74	-0.4
1,818,522	+		AMB_RS08495	0.74	-0.2
1,818,618	+		AMB_RS08495	0.81	+0.5
1,818,618	+		AMB_RS08495	0.81	-0.7
1,818,618	+		AMB_RS08495	0.81	-0.6
1,818,626	+		AMB_RS08495	0.81	-0.6
1,818,627	-		AMB_RS08495	0.81	-1.4
1,818,682	-		AMB_RS08495	0.85	-0.0
1,818,682	-		AMB_RS08495	0.85	-0.3
1,818,702	+		AMB_RS08495	0.87	-0.6
1,818,702	+		AMB_RS08495	0.87	-1.4
1,818,703	-		AMB_RS08495	0.87	-0.4
1,818,893	+				+0.4
1,818,894	-				+0.4
1,819,189	+				-1.8
1,819,223	+		AMB_RS08500	0.12	-0.3
1,819,223	+		AMB_RS08500	0.12	-0.1
1,819,224	-		AMB_RS08500	0.12	-0.1
1,819,224	-		AMB_RS08500	0.12	-0.1
1,819,224	-		AMB_RS08500	0.12	+0.2
1,819,224	-		AMB_RS08500	0.12	+1.4
1,819,224	-		AMB_RS08500	0.12	-1.2
1,819,225	+		AMB_RS08500	0.12	-2.3
1,819,226	-		AMB_RS08500	0.12	-1.0
1,819,226	-		AMB_RS08500	0.12	+0.7
1,819,226	-		AMB_RS08500	0.12	-0.1
1,819,226	-		AMB_RS08500	0.12	-0.3
1,819,226	-		AMB_RS08500	0.12	-0.2
1,819,336	+		AMB_RS08500	0.26	+0.5
1,819,336	+		AMB_RS08500	0.26	+0.1
1,819,337	-		AMB_RS08500	0.26	-0.6
1,819,337	-		AMB_RS08500	0.26	-0.6
1,820,052	+				-1.2
1,820,105	+				+0.4
1,820,106	-				+0.3
1,820,107	+				-2.0
1,820,108	-				-1.4
1,820,108	-				+0.1
1,820,108	-				+0.4
1,820,108	-				+0.7
1,820,108	-				-0.6
1,820,108	-				-2.2
1,820,109	+				-0.5
1,820,109	+				-0.6
1,820,109	+				-0.7
1,820,110	-				+0.1
1,820,110	-				+0.5
1,820,205	+				-0.6
1,820,205	+				+0.1
1,820,206	-				-0.6
1,820,357	+				-0.4
1,820,357	+				-0.6
1,820,357	+				-0.9
1,820,357	+				-2.0
1,820,357	+				+0.3
1,820,358	-				-2.0
1,820,358	-				-1.9
1,820,358	-				+0.6
1,820,358	-				+0.7
1,820,358	-				-1.4
1,820,431	+				-0.9
1,820,431	+				+0.2
1,820,431	+				-0.9
1,820,432	-				-1.8
1,820,527	+		AMB_RS08505	0.13	-0.2
1,820,527	+		AMB_RS08505	0.13	-1.8
1,820,527	+		AMB_RS08505	0.13	+0.9
1,820,527	+		AMB_RS08505	0.13	-0.2
1,820,527	+		AMB_RS08505	0.13	+0.8
1,820,527	+		AMB_RS08505	0.13	-0.0
1,820,527	+		AMB_RS08505	0.13	+0.8
1,820,527	+		AMB_RS08505	0.13	-2.2
1,820,528	-		AMB_RS08505	0.13	+0.5
1,820,528	-		AMB_RS08505	0.13	-2.2
1,820,528	-		AMB_RS08505	0.13	+1.4
1,820,528	-		AMB_RS08505	0.13	+0.4
1,820,528	-		AMB_RS08505	0.13	-0.6
1,820,533	+		AMB_RS08505	0.14	-1.6
1,820,534	-		AMB_RS08505	0.14	-0.2
1,820,534	-		AMB_RS08505	0.14	+0.3
1,820,534	-		AMB_RS08505	0.14	+1.3
1,820,534	-		AMB_RS08505	0.14	+0.8
1,820,534	-		AMB_RS08505	0.14	+0.6
1,820,534	-		AMB_RS08505	0.14	-0.0
1,820,545	+		AMB_RS08505	0.14	+0.1
1,820,545	+		AMB_RS08505	0.14	+0.1
1,820,546	-		AMB_RS08505	0.14	+0.4
1,820,546	-		AMB_RS08505	0.14	-1.8
1,820,717	-		AMB_RS08505	0.21	-1.4
1,820,755	+		AMB_RS08505	0.22	+0.4
1,820,755	+		AMB_RS08505	0.22	-1.8
1,820,755	+		AMB_RS08505	0.22	+0.4
1,820,755	+		AMB_RS08505	0.22	-1.2
1,820,755	+		AMB_RS08505	0.22	+0.4
1,820,755	+		AMB_RS08505	0.22	-1.4
1,820,756	-		AMB_RS08505	0.22	+0.6
1,820,756	-		AMB_RS08505	0.22	-1.2
1,820,756	-		AMB_RS08505	0.22	-2.8
1,820,756	-		AMB_RS08505	0.22	-1.6
1,820,756	-		AMB_RS08505	0.22	+0.2
1,820,756	-		AMB_RS08505	0.22	-0.0
1,820,756	-		AMB_RS08505	0.22	+0.2
1,820,806	+		AMB_RS08505	0.24	-0.0
1,820,806	+		AMB_RS08505	0.24	+0.8
1,820,833	+		AMB_RS08505	0.25	+0.2
1,820,833	+		AMB_RS08505	0.25	-2.2
1,820,833	+		AMB_RS08505	0.25	+0.5
1,820,833	+		AMB_RS08505	0.25	+1.6
1,820,834	-		AMB_RS08505	0.25	-1.6
1,820,851	+		AMB_RS08505	0.26	-0.4
1,820,851	+		AMB_RS08505	0.26	-1.2
1,820,852	-		AMB_RS08505	0.26	+0.1
1,820,852	-		AMB_RS08505	0.26	-0.3
1,820,852	-		AMB_RS08505	0.26	-0.9