Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07835

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07830 and AMB_RS07835 are separated by 41 nucleotidesAMB_RS07835 and AMB_RS07840 are separated by 63 nucleotides AMB_RS07830: AMB_RS07830 - NADP-dependent oxidoreductase, at 1,679,548 to 1,680,597 _RS07830 AMB_RS07835: AMB_RS07835 - acyl-CoA synthetase AMP-fatty acid ligase, at 1,680,639 to 1,682,141 _RS07835 AMB_RS07840: AMB_RS07840 - ABC transporter substrate-binding protein, at 1,682,205 to 1,683,359 _RS07840 Position (kb) 1680 1681 1682 1683Strain fitness (log2 ratio) -3 -2 -1 0 1at 1679.720 kb on + strand, within AMB_RS07830at 1679.720 kb on + strand, within AMB_RS07830at 1679.721 kb on - strand, within AMB_RS07830at 1679.721 kb on - strand, within AMB_RS07830at 1679.721 kb on - strand, within AMB_RS07830at 1679.721 kb on - strand, within AMB_RS07830at 1679.810 kb on + strand, within AMB_RS07830at 1679.811 kb on - strand, within AMB_RS07830at 1679.945 kb on + strand, within AMB_RS07830at 1679.945 kb on + strand, within AMB_RS07830at 1679.945 kb on + strand, within AMB_RS07830at 1679.945 kb on + strand, within AMB_RS07830at 1679.945 kb on + strand, within AMB_RS07830at 1679.946 kb on - strand, within AMB_RS07830at 1679.946 kb on - strand, within AMB_RS07830at 1679.946 kb on - strand, within AMB_RS07830at 1679.946 kb on - strand, within AMB_RS07830at 1679.946 kb on - strand, within AMB_RS07830at 1680.022 kb on + strand, within AMB_RS07830at 1680.171 kb on - strand, within AMB_RS07830at 1680.171 kb on - strand, within AMB_RS07830at 1680.188 kb on + strand, within AMB_RS07830at 1680.188 kb on + strand, within AMB_RS07830at 1680.197 kb on + strand, within AMB_RS07830at 1680.197 kb on + strand, within AMB_RS07830at 1680.197 kb on + strand, within AMB_RS07830at 1680.230 kb on + strand, within AMB_RS07830at 1680.230 kb on + strand, within AMB_RS07830at 1680.230 kb on + strand, within AMB_RS07830at 1680.231 kb on - strand, within AMB_RS07830at 1680.409 kb on + strand, within AMB_RS07830at 1680.410 kb on - strand, within AMB_RS07830at 1680.564 kb on + strandat 1680.564 kb on + strandat 1680.564 kb on + strandat 1680.564 kb on + strandat 1680.564 kb on + strandat 1680.565 kb on - strandat 1680.565 kb on - strandat 1680.565 kb on - strandat 1680.566 kb on + strandat 1680.567 kb on - strandat 1680.573 kb on - strandat 1680.573 kb on - strandat 1680.733 kb on + strandat 1680.733 kb on + strandat 1680.733 kb on + strandat 1680.733 kb on + strandat 1680.733 kb on + strandat 1680.734 kb on - strandat 1680.734 kb on - strandat 1680.734 kb on - strandat 1680.734 kb on - strandat 1680.734 kb on - strandat 1680.734 kb on - strandat 1680.815 kb on - strand, within AMB_RS07835at 1681.218 kb on + strand, within AMB_RS07835at 1681.218 kb on + strand, within AMB_RS07835at 1681.218 kb on + strand, within AMB_RS07835at 1681.219 kb on - strand, within AMB_RS07835at 1681.219 kb on - strand, within AMB_RS07835at 1681.384 kb on + strand, within AMB_RS07835at 1681.666 kb on + strand, within AMB_RS07835at 1681.666 kb on + strand, within AMB_RS07835at 1681.666 kb on + strand, within AMB_RS07835at 1681.667 kb on - strand, within AMB_RS07835at 1681.667 kb on - strand, within AMB_RS07835at 1681.667 kb on - strand, within AMB_RS07835at 1681.667 kb on - strand, within AMB_RS07835at 1681.933 kb on + strand, within AMB_RS07835at 1681.933 kb on + strand, within AMB_RS07835at 1682.051 kb on - strandat 1682.290 kb on + strandat 1682.290 kb on + strandat 1682.290 kb on + strandat 1682.291 kb on - strandat 1682.291 kb on - strandat 1682.461 kb on + strand, within AMB_RS07840at 1682.461 kb on + strand, within AMB_RS07840at 1682.461 kb on + strand, within AMB_RS07840at 1682.461 kb on + strand, within AMB_RS07840at 1682.461 kb on + strand, within AMB_RS07840at 1682.461 kb on + strand, within AMB_RS07840at 1682.461 kb on + strand, within AMB_RS07840at 1682.614 kb on + strand, within AMB_RS07840at 1682.614 kb on + strand, within AMB_RS07840at 1682.614 kb on + strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.761 kb on + strand, within AMB_RS07840at 1682.762 kb on - strand, within AMB_RS07840at 1682.992 kb on + strand, within AMB_RS07840at 1682.992 kb on + strand, within AMB_RS07840at 1682.992 kb on + strand, within AMB_RS07840at 1682.992 kb on + strand, within AMB_RS07840at 1682.992 kb on + strand, within AMB_RS07840at 1682.992 kb on + strand, within AMB_RS07840at 1682.992 kb on + strand, within AMB_RS07840at 1682.993 kb on - strand, within AMB_RS07840at 1682.993 kb on - strand, within AMB_RS07840at 1682.993 kb on - strand, within AMB_RS07840at 1682.993 kb on - strand, within AMB_RS07840at 1682.993 kb on - strand, within AMB_RS07840at 1683.136 kb on + strand, within AMB_RS07840at 1683.136 kb on + strand, within AMB_RS07840at 1683.136 kb on + strand, within AMB_RS07840at 1683.136 kb on + strand, within AMB_RS07840at 1683.137 kb on - strand, within AMB_RS07840at 1683.137 kb on - strand, within AMB_RS07840at 1683.137 kb on - strand, within AMB_RS07840at 1683.137 kb on - strand, within AMB_RS07840at 1683.137 kb on - strand, within AMB_RS07840at 1683.137 kb on - strand, within AMB_RS07840

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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1,679,720 + AMB_RS07830 0.16 -1.4
1,679,720 + AMB_RS07830 0.16 -1.6
1,679,721 - AMB_RS07830 0.16 -2.2
1,679,721 - AMB_RS07830 0.16 -0.9
1,679,721 - AMB_RS07830 0.16 +0.6
1,679,721 - AMB_RS07830 0.16 +0.4
1,679,810 + AMB_RS07830 0.25 -0.1
1,679,811 - AMB_RS07830 0.25 -0.6
1,679,945 + AMB_RS07830 0.38 -0.1
1,679,945 + AMB_RS07830 0.38 +0.4
1,679,945 + AMB_RS07830 0.38 -0.2
1,679,945 + AMB_RS07830 0.38 -1.9
1,679,945 + AMB_RS07830 0.38 -2.4
1,679,946 - AMB_RS07830 0.38 +0.2
1,679,946 - AMB_RS07830 0.38 +0.7
1,679,946 - AMB_RS07830 0.38 -1.3
1,679,946 - AMB_RS07830 0.38 -0.6
1,679,946 - AMB_RS07830 0.38 +1.0
1,680,022 + AMB_RS07830 0.45 -0.3
1,680,171 - AMB_RS07830 0.59 -0.1
1,680,171 - AMB_RS07830 0.59 +0.6
1,680,188 + AMB_RS07830 0.61 +0.8
1,680,188 + AMB_RS07830 0.61 -1.4
1,680,197 + AMB_RS07830 0.62 -0.2
1,680,197 + AMB_RS07830 0.62 -0.1
1,680,197 + AMB_RS07830 0.62 -2.4
1,680,230 + AMB_RS07830 0.65 +0.1
1,680,230 + AMB_RS07830 0.65 +0.3
1,680,230 + AMB_RS07830 0.65 -1.8
1,680,231 - AMB_RS07830 0.65 -2.2
1,680,409 + AMB_RS07830 0.82 +0.4
1,680,410 - AMB_RS07830 0.82 +1.0
1,680,564 + -0.2
1,680,564 + -2.2
1,680,564 + -0.1
1,680,564 + -0.9
1,680,564 + -1.4
1,680,565 - -1.5
1,680,565 - -0.1
1,680,565 - -1.9
1,680,566 + -1.8
1,680,567 - +0.0
1,680,573 - -1.2
1,680,573 - -0.9
1,680,733 + -1.2
1,680,733 + +0.5
1,680,733 + -2.3
1,680,733 + -1.1
1,680,733 + -1.4
1,680,734 - -0.1
1,680,734 - -0.2
1,680,734 - +0.7
1,680,734 - -0.5
1,680,734 - -0.1
1,680,734 - +0.2
1,680,815 - AMB_RS07835 0.12 -0.0
1,681,218 + AMB_RS07835 0.39 -2.1
1,681,218 + AMB_RS07835 0.39 +0.0
1,681,218 + AMB_RS07835 0.39 -0.4
1,681,219 - AMB_RS07835 0.39 +0.5
1,681,219 - AMB_RS07835 0.39 -0.1
1,681,384 + AMB_RS07835 0.50 -0.3
1,681,666 + AMB_RS07835 0.68 -0.3
1,681,666 + AMB_RS07835 0.68 -0.8
1,681,666 + AMB_RS07835 0.68 -0.1
1,681,667 - AMB_RS07835 0.68 -1.2
1,681,667 - AMB_RS07835 0.68 +0.4
1,681,667 - AMB_RS07835 0.68 +0.5
1,681,667 - AMB_RS07835 0.68 -0.9
1,681,933 + AMB_RS07835 0.86 -0.4
1,681,933 + AMB_RS07835 0.86 +0.1
1,682,051 - +0.6
1,682,290 + -1.8
1,682,290 + -2.1
1,682,290 + +1.4
1,682,291 - -1.8
1,682,291 - -2.4
1,682,461 + AMB_RS07840 0.22 -0.9
1,682,461 + AMB_RS07840 0.22 -2.2
1,682,461 + AMB_RS07840 0.22 -2.0
1,682,461 + AMB_RS07840 0.22 -1.7
1,682,461 + AMB_RS07840 0.22 -0.9
1,682,461 + AMB_RS07840 0.22 -1.8
1,682,461 + AMB_RS07840 0.22 -0.2
1,682,614 + AMB_RS07840 0.35 -1.2
1,682,614 + AMB_RS07840 0.35 -1.1
1,682,614 + AMB_RS07840 0.35 -3.4
1,682,615 - AMB_RS07840 0.35 -2.2
1,682,615 - AMB_RS07840 0.35 -1.9
1,682,615 - AMB_RS07840 0.35 -2.2
1,682,615 - AMB_RS07840 0.35 -3.0
1,682,615 - AMB_RS07840 0.35 -1.2
1,682,615 - AMB_RS07840 0.35 -1.7
1,682,615 - AMB_RS07840 0.35 -0.8
1,682,615 - AMB_RS07840 0.35 -2.2
1,682,615 - AMB_RS07840 0.35 -1.8
1,682,615 - AMB_RS07840 0.35 -0.0
1,682,615 - AMB_RS07840 0.35 -1.4
1,682,615 - AMB_RS07840 0.35 -2.5
1,682,615 - AMB_RS07840 0.35 -0.6
1,682,761 + AMB_RS07840 0.48 -0.0
1,682,762 - AMB_RS07840 0.48 -2.0
1,682,992 + AMB_RS07840 0.68 -0.2
1,682,992 + AMB_RS07840 0.68 -1.4
1,682,992 + AMB_RS07840 0.68 -1.9
1,682,992 + AMB_RS07840 0.68 -2.6
1,682,992 + AMB_RS07840 0.68 -0.6
1,682,992 + AMB_RS07840 0.68 -1.4
1,682,992 + AMB_RS07840 0.68 -1.6
1,682,993 - AMB_RS07840 0.68 +0.7
1,682,993 - AMB_RS07840 0.68 -1.8
1,682,993 - AMB_RS07840 0.68 -2.1
1,682,993 - AMB_RS07840 0.68 -0.9
1,682,993 - AMB_RS07840 0.68 -0.6
1,683,136 + AMB_RS07840 0.81 -0.9
1,683,136 + AMB_RS07840 0.81 -1.9
1,683,136 + AMB_RS07840 0.81 -0.9
1,683,136 + AMB_RS07840 0.81 -1.2
1,683,137 - AMB_RS07840 0.81 -2.4
1,683,137 - AMB_RS07840 0.81 -1.9
1,683,137 - AMB_RS07840 0.81 -1.2
1,683,137 - AMB_RS07840 0.81 -0.2
1,683,137 - AMB_RS07840 0.81 -1.8
1,683,137 - AMB_RS07840 0.81 -2.2

Or see this region's nucleotide sequence