Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07030

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07025 and AMB_RS07030 are separated by 37 nucleotidesAMB_RS07030 and AMB_RS07035 overlap by 4 nucleotides AMB_RS07025: AMB_RS07025 - flagellar hook protein FlgE, at 1,507,024 to 1,508,661 _RS07025 AMB_RS07030: AMB_RS07030 - 1-aminocyclopropane-1-carboxylate deaminase, at 1,508,699 to 1,509,853 _RS07030 AMB_RS07035: AMB_RS07035 - gamma-glutamyltransferase, at 1,509,850 to 1,511,481 _RS07035 Position (kb) 1508 1509 1510Strain fitness (log2 ratio) -3 -2 -1 0 1at 1507.970 kb on - strand, within AMB_RS07025at 1508.035 kb on + strand, within AMB_RS07025at 1508.035 kb on + strand, within AMB_RS07025at 1508.036 kb on - strand, within AMB_RS07025at 1508.036 kb on - strand, within AMB_RS07025at 1508.036 kb on - strand, within AMB_RS07025at 1508.101 kb on + strand, within AMB_RS07025at 1508.101 kb on + strand, within AMB_RS07025at 1508.101 kb on + strand, within AMB_RS07025at 1508.102 kb on - strand, within AMB_RS07025at 1508.102 kb on - strand, within AMB_RS07025at 1508.102 kb on - strand, within AMB_RS07025at 1508.102 kb on - strand, within AMB_RS07025at 1508.103 kb on + strand, within AMB_RS07025at 1508.103 kb on + strand, within AMB_RS07025at 1508.122 kb on - strand, within AMB_RS07025at 1508.128 kb on + strand, within AMB_RS07025at 1508.211 kb on + strand, within AMB_RS07025at 1508.221 kb on - strand, within AMB_RS07025at 1508.293 kb on + strand, within AMB_RS07025at 1508.294 kb on - strand, within AMB_RS07025at 1508.353 kb on + strand, within AMB_RS07025at 1508.397 kb on + strand, within AMB_RS07025at 1508.397 kb on + strand, within AMB_RS07025at 1508.590 kb on + strandat 1508.591 kb on - strandat 1508.591 kb on - strandat 1508.591 kb on - strandat 1508.655 kb on + strandat 1508.761 kb on - strandat 1508.761 kb on - strandat 1508.893 kb on - strand, within AMB_RS07030at 1508.893 kb on - strand, within AMB_RS07030at 1508.893 kb on - strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.898 kb on + strand, within AMB_RS07030at 1508.899 kb on - strand, within AMB_RS07030at 1508.899 kb on - strand, within AMB_RS07030at 1508.899 kb on - strand, within AMB_RS07030at 1508.899 kb on - strand, within AMB_RS07030at 1508.899 kb on - strand, within AMB_RS07030at 1508.899 kb on - strand, within AMB_RS07030at 1508.899 kb on - strand, within AMB_RS07030at 1509.063 kb on + strand, within AMB_RS07030at 1509.063 kb on + strand, within AMB_RS07030at 1509.064 kb on - strand, within AMB_RS07030at 1509.064 kb on - strand, within AMB_RS07030at 1509.064 kb on - strand, within AMB_RS07030at 1509.147 kb on + strand, within AMB_RS07030at 1509.148 kb on - strand, within AMB_RS07030at 1509.148 kb on - strand, within AMB_RS07030at 1509.150 kb on + strand, within AMB_RS07030at 1509.150 kb on + strand, within AMB_RS07030at 1509.151 kb on - strand, within AMB_RS07030at 1509.151 kb on - strand, within AMB_RS07030at 1509.225 kb on + strand, within AMB_RS07030at 1509.225 kb on + strand, within AMB_RS07030at 1509.225 kb on + strand, within AMB_RS07030at 1509.225 kb on + strand, within AMB_RS07030at 1509.226 kb on - strand, within AMB_RS07030at 1509.226 kb on - strand, within AMB_RS07030at 1509.226 kb on - strand, within AMB_RS07030at 1509.226 kb on - strand, within AMB_RS07030at 1509.226 kb on - strand, within AMB_RS07030at 1509.240 kb on + strand, within AMB_RS07030at 1509.240 kb on + strand, within AMB_RS07030at 1509.240 kb on + strand, within AMB_RS07030at 1509.240 kb on + strand, within AMB_RS07030at 1509.240 kb on + strand, within AMB_RS07030at 1509.240 kb on + strand, within AMB_RS07030at 1509.241 kb on - strand, within AMB_RS07030at 1509.241 kb on - strand, within AMB_RS07030at 1509.600 kb on + strand, within AMB_RS07030at 1509.600 kb on + strand, within AMB_RS07030at 1509.600 kb on + strand, within AMB_RS07030at 1509.600 kb on + strand, within AMB_RS07030at 1509.601 kb on - strand, within AMB_RS07030at 1509.663 kb on + strand, within AMB_RS07030at 1509.664 kb on - strand, within AMB_RS07030at 1509.664 kb on - strand, within AMB_RS07030at 1509.664 kb on - strand, within AMB_RS07030at 1509.713 kb on - strand, within AMB_RS07030at 1509.713 kb on - strand, within AMB_RS07030at 1509.713 kb on - strand, within AMB_RS07030at 1509.713 kb on - strand, within AMB_RS07030at 1509.944 kb on + strandat 1509.944 kb on + strandat 1509.944 kb on + strandat 1509.945 kb on - strandat 1509.945 kb on - strandat 1510.267 kb on + strand, within AMB_RS07035at 1510.267 kb on + strand, within AMB_RS07035at 1510.267 kb on + strand, within AMB_RS07035at 1510.267 kb on + strand, within AMB_RS07035at 1510.267 kb on + strand, within AMB_RS07035at 1510.267 kb on + strand, within AMB_RS07035at 1510.268 kb on - strand, within AMB_RS07035at 1510.268 kb on - strand, within AMB_RS07035at 1510.268 kb on - strand, within AMB_RS07035at 1510.268 kb on - strand, within AMB_RS07035at 1510.268 kb on - strand, within AMB_RS07035at 1510.436 kb on + strand, within AMB_RS07035at 1510.436 kb on + strand, within AMB_RS07035at 1510.832 kb on - strand, within AMB_RS07035

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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1,507,970 - AMB_RS07025 0.58 +0.2
1,508,035 + AMB_RS07025 0.62 -0.2
1,508,035 + AMB_RS07025 0.62 -0.0
1,508,036 - AMB_RS07025 0.62 -0.2
1,508,036 - AMB_RS07025 0.62 -0.3
1,508,036 - AMB_RS07025 0.62 -0.6
1,508,101 + AMB_RS07025 0.66 -0.2
1,508,101 + AMB_RS07025 0.66 -1.1
1,508,101 + AMB_RS07025 0.66 -1.9
1,508,102 - AMB_RS07025 0.66 +0.6
1,508,102 - AMB_RS07025 0.66 +0.5
1,508,102 - AMB_RS07025 0.66 -0.6
1,508,102 - AMB_RS07025 0.66 -2.3
1,508,103 + AMB_RS07025 0.66 -1.2
1,508,103 + AMB_RS07025 0.66 -0.6
1,508,122 - AMB_RS07025 0.67 -0.3
1,508,128 + AMB_RS07025 0.67 -1.6
1,508,211 + AMB_RS07025 0.72 -0.2
1,508,221 - AMB_RS07025 0.73 +0.1
1,508,293 + AMB_RS07025 0.77 +0.1
1,508,294 - AMB_RS07025 0.78 -0.6
1,508,353 + AMB_RS07025 0.81 +0.3
1,508,397 + AMB_RS07025 0.84 -1.6
1,508,397 + AMB_RS07025 0.84 -0.1
1,508,590 + -1.4
1,508,591 - +0.3
1,508,591 - -0.4
1,508,591 - -0.6
1,508,655 + -1.4
1,508,761 - +0.3
1,508,761 - +0.1
1,508,893 - AMB_RS07030 0.17 -0.0
1,508,893 - AMB_RS07030 0.17 -0.0
1,508,893 - AMB_RS07030 0.17 -0.2
1,508,898 + AMB_RS07030 0.17 -1.4
1,508,898 + AMB_RS07030 0.17 -0.9
1,508,898 + AMB_RS07030 0.17 +1.2
1,508,898 + AMB_RS07030 0.17 -2.8
1,508,898 + AMB_RS07030 0.17 -1.4
1,508,898 + AMB_RS07030 0.17 +0.2
1,508,898 + AMB_RS07030 0.17 -1.7
1,508,898 + AMB_RS07030 0.17 +0.3
1,508,899 - AMB_RS07030 0.17 -0.2
1,508,899 - AMB_RS07030 0.17 +0.4
1,508,899 - AMB_RS07030 0.17 -0.1
1,508,899 - AMB_RS07030 0.17 +0.1
1,508,899 - AMB_RS07030 0.17 +0.3
1,508,899 - AMB_RS07030 0.17 -2.2
1,508,899 - AMB_RS07030 0.17 -0.6
1,509,063 + AMB_RS07030 0.32 +0.5
1,509,063 + AMB_RS07030 0.32 -1.1
1,509,064 - AMB_RS07030 0.32 -0.9
1,509,064 - AMB_RS07030 0.32 +0.5
1,509,064 - AMB_RS07030 0.32 -0.6
1,509,147 + AMB_RS07030 0.39 -0.9
1,509,148 - AMB_RS07030 0.39 -0.6
1,509,148 - AMB_RS07030 0.39 +0.1
1,509,150 + AMB_RS07030 0.39 -3.1
1,509,150 + AMB_RS07030 0.39 -0.9
1,509,151 - AMB_RS07030 0.39 -0.6
1,509,151 - AMB_RS07030 0.39 -3.7
1,509,225 + AMB_RS07030 0.46 -0.3
1,509,225 + AMB_RS07030 0.46 -1.2
1,509,225 + AMB_RS07030 0.46 +0.1
1,509,225 + AMB_RS07030 0.46 -0.0
1,509,226 - AMB_RS07030 0.46 -2.8
1,509,226 - AMB_RS07030 0.46 -0.2
1,509,226 - AMB_RS07030 0.46 -1.2
1,509,226 - AMB_RS07030 0.46 +0.4
1,509,226 - AMB_RS07030 0.46 +0.4
1,509,240 + AMB_RS07030 0.47 -0.5
1,509,240 + AMB_RS07030 0.47 +0.4
1,509,240 + AMB_RS07030 0.47 -0.6
1,509,240 + AMB_RS07030 0.47 +0.2
1,509,240 + AMB_RS07030 0.47 +0.2
1,509,240 + AMB_RS07030 0.47 +1.1
1,509,241 - AMB_RS07030 0.47 -2.2
1,509,241 - AMB_RS07030 0.47 +0.0
1,509,600 + AMB_RS07030 0.78 +0.0
1,509,600 + AMB_RS07030 0.78 -0.9
1,509,600 + AMB_RS07030 0.78 +0.2
1,509,600 + AMB_RS07030 0.78 -0.4
1,509,601 - AMB_RS07030 0.78 -0.6
1,509,663 + AMB_RS07030 0.83 -2.8
1,509,664 - AMB_RS07030 0.84 -0.2
1,509,664 - AMB_RS07030 0.84 -0.6
1,509,664 - AMB_RS07030 0.84 +1.4
1,509,713 - AMB_RS07030 0.88 -0.6
1,509,713 - AMB_RS07030 0.88 +0.1
1,509,713 - AMB_RS07030 0.88 +0.2
1,509,713 - AMB_RS07030 0.88 -0.2
1,509,944 + -3.3
1,509,944 + +0.2
1,509,944 + -0.3
1,509,945 - +0.5
1,509,945 - -0.1
1,510,267 + AMB_RS07035 0.26 -0.2
1,510,267 + AMB_RS07035 0.26 -1.2
1,510,267 + AMB_RS07035 0.26 -0.2
1,510,267 + AMB_RS07035 0.26 -0.1
1,510,267 + AMB_RS07035 0.26 -1.3
1,510,267 + AMB_RS07035 0.26 -0.1
1,510,268 - AMB_RS07035 0.26 -2.0
1,510,268 - AMB_RS07035 0.26 -0.3
1,510,268 - AMB_RS07035 0.26 -0.2
1,510,268 - AMB_RS07035 0.26 -1.4
1,510,268 - AMB_RS07035 0.26 -1.2
1,510,436 + AMB_RS07035 0.36 -0.6
1,510,436 + AMB_RS07035 0.36 +0.4
1,510,832 - AMB_RS07035 0.60 -1.9

Or see this region's nucleotide sequence