Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05590

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23220 and AMB_RS05585 are separated by 63 nucleotidesAMB_RS05585 and AMB_RS05590 are separated by 10 nucleotidesAMB_RS05590 and AMB_RS05595 are separated by 204 nucleotides AMB_RS23220: AMB_RS23220 - hypothetical protein, at 1,164,367 to 1,164,831 _RS23220 AMB_RS05585: AMB_RS05585 - hypothetical protein, at 1,164,895 to 1,165,707 _RS05585 AMB_RS05590: AMB_RS05590 - hypothetical protein, at 1,165,718 to 1,165,954 _RS05590 AMB_RS05595: AMB_RS05595 - agmatinase, at 1,166,159 to 1,167,052 _RS05595 Position (kb) 1165 1166Strain fitness (log2 ratio) -2 -1 0 1at 1165.228 kb on + strand, within AMB_RS05585at 1165.229 kb on - strand, within AMB_RS05585at 1165.229 kb on - strand, within AMB_RS05585at 1165.229 kb on - strand, within AMB_RS05585at 1165.303 kb on + strand, within AMB_RS05585at 1165.303 kb on + strand, within AMB_RS05585at 1165.304 kb on - strand, within AMB_RS05585at 1165.304 kb on - strand, within AMB_RS05585at 1165.528 kb on + strand, within AMB_RS05585at 1165.529 kb on - strand, within AMB_RS05585at 1165.529 kb on - strand, within AMB_RS05585at 1165.529 kb on - strand, within AMB_RS05585at 1165.642 kb on + strandat 1165.643 kb on - strandat 1165.644 kb on + strandat 1165.644 kb on + strandat 1165.644 kb on + strandat 1165.644 kb on + strandat 1165.645 kb on - strandat 1165.684 kb on + strandat 1165.684 kb on + strandat 1165.685 kb on - strandat 1165.685 kb on - strandat 1165.685 kb on - strandat 1165.705 kb on + strandat 1165.705 kb on + strandat 1165.706 kb on - strandat 1165.706 kb on - strandat 1165.706 kb on - strandat 1165.839 kb on + strand, within AMB_RS05590at 1165.839 kb on + strand, within AMB_RS05590at 1165.839 kb on + strand, within AMB_RS05590at 1165.839 kb on + strand, within AMB_RS05590at 1165.839 kb on + strand, within AMB_RS05590at 1165.840 kb on - strand, within AMB_RS05590at 1165.840 kb on - strand, within AMB_RS05590at 1166.080 kb on + strandat 1166.081 kb on - strandat 1166.081 kb on - strandat 1166.081 kb on - strandat 1166.696 kb on + strand, within AMB_RS05595at 1166.696 kb on + strand, within AMB_RS05595at 1166.696 kb on + strand, within AMB_RS05595at 1166.696 kb on + strand, within AMB_RS05595at 1166.696 kb on + strand, within AMB_RS05595at 1166.696 kb on + strand, within AMB_RS05595at 1166.696 kb on + strand, within AMB_RS05595at 1166.696 kb on + strand, within AMB_RS05595at 1166.697 kb on - strand, within AMB_RS05595at 1166.697 kb on - strand, within AMB_RS05595at 1166.810 kb on + strand, within AMB_RS05595at 1166.811 kb on - strand, within AMB_RS05595at 1166.811 kb on - strand, within AMB_RS05595at 1166.811 kb on - strand, within AMB_RS05595

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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1,165,228 + AMB_RS05585 0.41 -0.1
1,165,229 - AMB_RS05585 0.41 -2.1
1,165,229 - AMB_RS05585 0.41 -0.2
1,165,229 - AMB_RS05585 0.41 +0.3
1,165,303 + AMB_RS05585 0.50 -0.0
1,165,303 + AMB_RS05585 0.50 +0.8
1,165,304 - AMB_RS05585 0.50 +0.2
1,165,304 - AMB_RS05585 0.50 +0.0
1,165,528 + AMB_RS05585 0.78 -0.3
1,165,529 - AMB_RS05585 0.78 -0.8
1,165,529 - AMB_RS05585 0.78 +0.2
1,165,529 - AMB_RS05585 0.78 -0.3
1,165,642 + +0.5
1,165,643 - +0.0
1,165,644 + -0.3
1,165,644 + +0.1
1,165,644 + -0.5
1,165,644 + -2.0
1,165,645 - -0.1
1,165,684 + +0.0
1,165,684 + -0.5
1,165,685 - -0.1
1,165,685 - -1.5
1,165,685 - -0.2
1,165,705 + +0.3
1,165,705 + -0.1
1,165,706 - -2.0
1,165,706 - -0.8
1,165,706 - +0.5
1,165,839 + AMB_RS05590 0.51 -0.2
1,165,839 + AMB_RS05590 0.51 +0.5
1,165,839 + AMB_RS05590 0.51 -0.8
1,165,839 + AMB_RS05590 0.51 -2.0
1,165,839 + AMB_RS05590 0.51 -1.3
1,165,840 - AMB_RS05590 0.51 +0.1
1,165,840 - AMB_RS05590 0.51 -0.1
1,166,080 + -0.1
1,166,081 - -2.0
1,166,081 - -0.1
1,166,081 - -1.5
1,166,696 + AMB_RS05595 0.60 +0.2
1,166,696 + AMB_RS05595 0.60 -0.1
1,166,696 + AMB_RS05595 0.60 +0.5
1,166,696 + AMB_RS05595 0.60 +0.3
1,166,696 + AMB_RS05595 0.60 -0.5
1,166,696 + AMB_RS05595 0.60 +0.1
1,166,696 + AMB_RS05595 0.60 +0.5
1,166,696 + AMB_RS05595 0.60 -2.0
1,166,697 - AMB_RS05595 0.60 -0.8
1,166,697 - AMB_RS05595 0.60 -0.1
1,166,810 + AMB_RS05595 0.73 -0.1
1,166,811 - AMB_RS05595 0.73 +0.2
1,166,811 - AMB_RS05595 0.73 -1.1
1,166,811 - AMB_RS05595 0.73 +1.3

Or see this region's nucleotide sequence