Experiment: 30_an_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04780 and AMB_RS04785 are separated by 399 nucleotides AMB_RS04785 and AMB_RS04790 are separated by 178 nucleotides AMB_RS04790 and AMB_RS23685 are separated by 89 nucleotides AMB_RS23685 and AMB_RS23690 are separated by 6 nucleotides
AMB_RS04780: AMB_RS04780 - IS91 family transposase, at 995,357 to 996,529
_RS04780
AMB_RS04785: AMB_RS04785 - IS5/IS1182 family transposase, at 996,929 to 997,303
_RS04785
AMB_RS04790: AMB_RS04790 - hypothetical protein, at 997,482 to 997,673
_RS04790
AMB_RS23685: AMB_RS23685 - hypothetical protein, at 997,763 to 998,137
_RS23685
AMB_RS23690: AMB_RS23690 - IS110 family transposase, at 998,144 to 998,371
_RS23690
Position (kb) 996
997
998 Strain fitness (log2 ratio) -2
-1
0
1 at 996.018 kb on - strand, within AMB_RS04780 at 996.048 kb on + strand, within AMB_RS04780 at 996.053 kb on + strand, within AMB_RS04780 at 996.053 kb on + strand, within AMB_RS04780 at 996.054 kb on - strand, within AMB_RS04780 at 996.095 kb on + strand, within AMB_RS04780 at 996.095 kb on + strand, within AMB_RS04780 at 996.095 kb on + strand, within AMB_RS04780 at 996.096 kb on - strand, within AMB_RS04780 at 996.096 kb on - strand, within AMB_RS04780 at 996.107 kb on + strand, within AMB_RS04780 at 996.107 kb on + strand, within AMB_RS04780 at 996.107 kb on + strand, within AMB_RS04780 at 996.107 kb on + strand, within AMB_RS04780 at 996.108 kb on - strand, within AMB_RS04780 at 996.109 kb on + strand, within AMB_RS04780 at 996.109 kb on + strand, within AMB_RS04780 at 996.109 kb on + strand, within AMB_RS04780 at 996.110 kb on - strand, within AMB_RS04780 at 996.110 kb on - strand, within AMB_RS04780 at 996.185 kb on + strand, within AMB_RS04780 at 996.185 kb on + strand, within AMB_RS04780 at 996.291 kb on - strand, within AMB_RS04780 at 996.395 kb on + strand, within AMB_RS04780 at 996.396 kb on - strand, within AMB_RS04780 at 996.564 kb on + strand at 996.564 kb on + strand at 996.565 kb on - strand at 996.772 kb on + strand at 996.773 kb on - strand at 996.951 kb on + strand at 996.951 kb on + strand at 996.952 kb on - strand at 997.053 kb on + strand, within AMB_RS04785 at 997.053 kb on + strand, within AMB_RS04785 at 997.053 kb on + strand, within AMB_RS04785 at 997.054 kb on - strand, within AMB_RS04785 at 997.054 kb on - strand, within AMB_RS04785 at 997.054 kb on - strand, within AMB_RS04785 at 997.156 kb on - strand, within AMB_RS04785 at 997.156 kb on - strand, within AMB_RS04785 at 997.156 kb on - strand, within AMB_RS04785 at 997.203 kb on - strand, within AMB_RS04785 at 997.203 kb on - strand, within AMB_RS04785 at 997.203 kb on - strand, within AMB_RS04785
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_1 remove 996,018 - AMB_RS04780 0.56 -0.4 996,048 + AMB_RS04780 0.59 -0.8 996,053 + AMB_RS04780 0.59 -0.6 996,053 + AMB_RS04780 0.59 -0.8 996,054 - AMB_RS04780 0.59 +0.2 996,095 + AMB_RS04780 0.63 +0.7 996,095 + AMB_RS04780 0.63 +0.5 996,095 + AMB_RS04780 0.63 -0.8 996,096 - AMB_RS04780 0.63 -1.1 996,096 - AMB_RS04780 0.63 -0.8 996,107 + AMB_RS04780 0.64 -1.1 996,107 + AMB_RS04780 0.64 +0.0 996,107 + AMB_RS04780 0.64 -0.1 996,107 + AMB_RS04780 0.64 +0.6 996,108 - AMB_RS04780 0.64 +0.2 996,109 + AMB_RS04780 0.64 -0.8 996,109 + AMB_RS04780 0.64 -0.1 996,109 + AMB_RS04780 0.64 +0.4 996,110 - AMB_RS04780 0.64 -1.5 996,110 - AMB_RS04780 0.64 -0.1 996,185 + AMB_RS04780 0.71 -0.1 996,185 + AMB_RS04780 0.71 +0.7 996,291 - AMB_RS04780 0.80 +0.6 996,395 + AMB_RS04780 0.88 +0.1 996,396 - AMB_RS04780 0.89 +0.4 996,564 + -0.8 996,564 + +0.1 996,565 - -1.1 996,772 + -1.8 996,773 - +1.0 996,951 + +0.0 996,951 + -1.6 996,952 - -1.6 997,053 + AMB_RS04785 0.33 +1.5 997,053 + AMB_RS04785 0.33 -0.1 997,053 + AMB_RS04785 0.33 -1.1 997,054 - AMB_RS04785 0.33 +0.0 997,054 - AMB_RS04785 0.33 -1.5 997,054 - AMB_RS04785 0.33 -0.1 997,156 - AMB_RS04785 0.61 -0.3 997,156 - AMB_RS04785 0.61 -2.4 997,156 - AMB_RS04785 0.61 -1.8 997,203 - AMB_RS04785 0.73 -0.5 997,203 - AMB_RS04785 0.73 -1.8 997,203 - AMB_RS04785 0.73 +0.7
Or see this region's nucleotide sequence