Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04295

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04290 and AMB_RS04295 are separated by 137 nucleotidesAMB_RS04295 and AMB_RS04300 are separated by 143 nucleotides AMB_RS04290: AMB_RS04290 - poly-beta-hydroxybutyrate polymerase, at 900,526 to 901,632 _RS04290 AMB_RS04295: AMB_RS04295 - acetyl-CoA C-acetyltransferase, at 901,770 to 902,942 _RS04295 AMB_RS04300: AMB_RS04300 - beta-ketoacyl-ACP reductase, at 903,086 to 903,808 _RS04300 Position (kb) 901 902 903Strain fitness (log2 ratio) -2 -1 0 1at 901.630 kb on + strandat 901.630 kb on + strandat 901.630 kb on + strandat 901.630 kb on + strandat 901.630 kb on + strandat 901.630 kb on + strandat 901.630 kb on + strandat 901.742 kb on + strandat 901.743 kb on - strandat 901.744 kb on + strandat 901.744 kb on + strandat 901.744 kb on + strandat 901.745 kb on - strandat 902.145 kb on + strand, within AMB_RS04295at 902.945 kb on + strandat 902.945 kb on + strandat 902.946 kb on - strandat 902.946 kb on - strandat 902.959 kb on - strandat 903.803 kb on + strandat 903.804 kb on - strandat 903.804 kb on - strandat 903.804 kb on - strandat 903.804 kb on - strandat 903.804 kb on - strandat 903.938 kb on + strandat 903.938 kb on + strandat 903.938 kb on + strandat 903.938 kb on + strandat 903.939 kb on - strandat 903.939 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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901,630 + -1.5
901,630 + -0.5
901,630 + +1.5
901,630 + -2.0
901,630 + +1.5
901,630 + -0.8
901,630 + +0.6
901,742 + +0.0
901,743 - -0.3
901,744 + +0.9
901,744 + +0.1
901,744 + +0.5
901,745 - -2.3
902,145 + AMB_RS04295 0.32 -1.3
902,945 + -1.8
902,945 + -0.1
902,946 - -0.8
902,946 - -0.1
902,959 - -0.6
903,803 + +0.3
903,804 - -0.1
903,804 - -0.2
903,804 - -0.5
903,804 - -0.4
903,804 - -0.2
903,938 + -0.0
903,938 + -0.0
903,938 + -0.8
903,938 + +1.3
903,939 - +0.1
903,939 - -0.1

Or see this region's nucleotide sequence