Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04130

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04120 and AMB_RS04125 overlap by 4 nucleotidesAMB_RS04125 and AMB_RS04130 are separated by 18 nucleotidesAMB_RS04130 and AMB_RS04135 overlap by 4 nucleotidesAMB_RS04135 and AMB_RS04140 are separated by 34 nucleotides AMB_RS04120: AMB_RS04120 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 863,964 to 864,728 _RS04120 AMB_RS04125: AMB_RS04125 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase, at 864,725 to 865,501 _RS04125 AMB_RS04130: AMB_RS04130 - TRAP transporter large permease, at 865,520 to 866,848 _RS04130 AMB_RS04135: AMB_RS04135 - TRAP transporter small permease, at 866,845 to 867,378 _RS04135 AMB_RS04140: AMB_RS04140 - TRAP-type C4-dicarboxylate transport system, at 867,413 to 868,528 _RS04140 Position (kb) 865 866 867Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 864.568 kb on + strand, within AMB_RS04120at 864.568 kb on + strand, within AMB_RS04120at 864.568 kb on + strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.705 kb on - strandat 864.706 kb on + strandat 864.707 kb on - strandat 864.906 kb on + strand, within AMB_RS04125at 864.907 kb on - strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 865.063 kb on - strand, within AMB_RS04125at 865.260 kb on + strand, within AMB_RS04125at 865.261 kb on - strand, within AMB_RS04125at 865.261 kb on - strand, within AMB_RS04125at 865.261 kb on - strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.356 kb on + strand, within AMB_RS04125at 865.357 kb on - strand, within AMB_RS04125at 865.357 kb on - strand, within AMB_RS04125at 865.665 kb on + strand, within AMB_RS04130at 865.665 kb on + strand, within AMB_RS04130at 865.666 kb on - strand, within AMB_RS04130at 865.666 kb on - strand, within AMB_RS04130at 865.666 kb on - strand, within AMB_RS04130at 865.666 kb on - strand, within AMB_RS04130at 865.764 kb on + strand, within AMB_RS04130at 865.765 kb on - strand, within AMB_RS04130at 865.765 kb on - strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.854 kb on + strand, within AMB_RS04130at 865.855 kb on - strand, within AMB_RS04130at 865.855 kb on - strand, within AMB_RS04130at 865.855 kb on - strand, within AMB_RS04130at 865.855 kb on - strand, within AMB_RS04130at 865.855 kb on - strand, within AMB_RS04130at 865.855 kb on - strand, within AMB_RS04130at 866.018 kb on + strand, within AMB_RS04130at 866.018 kb on + strand, within AMB_RS04130at 866.127 kb on + strand, within AMB_RS04130at 866.127 kb on + strand, within AMB_RS04130at 866.127 kb on + strand, within AMB_RS04130at 866.127 kb on + strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.128 kb on - strand, within AMB_RS04130at 866.269 kb on + strand, within AMB_RS04130at 866.269 kb on + strand, within AMB_RS04130at 866.269 kb on + strand, within AMB_RS04130at 866.269 kb on + strand, within AMB_RS04130at 866.269 kb on + strand, within AMB_RS04130at 866.269 kb on + strand, within AMB_RS04130at 866.269 kb on + strand, within AMB_RS04130at 866.270 kb on - strand, within AMB_RS04130at 866.271 kb on + strand, within AMB_RS04130at 866.271 kb on + strand, within AMB_RS04130at 866.271 kb on + strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.272 kb on - strand, within AMB_RS04130at 866.349 kb on + strand, within AMB_RS04130at 866.349 kb on + strand, within AMB_RS04130at 866.350 kb on - strand, within AMB_RS04130at 866.350 kb on - strand, within AMB_RS04130at 866.350 kb on - strand, within AMB_RS04130at 866.433 kb on + strand, within AMB_RS04130at 866.433 kb on + strand, within AMB_RS04130at 866.433 kb on + strand, within AMB_RS04130at 866.434 kb on - strand, within AMB_RS04130at 866.541 kb on + strand, within AMB_RS04130at 866.541 kb on + strand, within AMB_RS04130at 866.542 kb on - strand, within AMB_RS04130at 866.542 kb on - strand, within AMB_RS04130at 866.664 kb on + strand, within AMB_RS04130at 866.665 kb on - strand, within AMB_RS04130at 866.682 kb on + strand, within AMB_RS04130at 866.742 kb on + strandat 866.742 kb on + strandat 866.742 kb on + strandat 866.742 kb on + strandat 866.742 kb on + strandat 866.743 kb on - strandat 866.743 kb on - strandat 866.743 kb on - strandat 866.892 kb on - strandat 866.892 kb on - strandat 867.391 kb on + strandat 867.392 kb on - strandat 867.432 kb on + strandat 867.433 kb on - strandat 867.433 kb on - strandat 867.601 kb on - strand, within AMB_RS04140at 867.711 kb on + strand, within AMB_RS04140at 867.712 kb on - strand, within AMB_RS04140at 867.786 kb on + strand, within AMB_RS04140at 867.786 kb on + strand, within AMB_RS04140at 867.787 kb on - strand, within AMB_RS04140at 867.787 kb on - strand, within AMB_RS04140

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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864,568 + AMB_RS04120 0.79 +0.4
864,568 + AMB_RS04120 0.79 -0.8
864,568 + AMB_RS04120 0.79 +0.6
864,569 - AMB_RS04120 0.79 +0.1
864,569 - AMB_RS04120 0.79 -0.2
864,569 - AMB_RS04120 0.79 -0.2
864,569 - AMB_RS04120 0.79 -0.1
864,705 - -0.2
864,706 + -1.1
864,707 - -0.0
864,906 + AMB_RS04125 0.23 +0.2
864,907 - AMB_RS04125 0.23 -1.8
864,951 + AMB_RS04125 0.29 -2.0
864,951 + AMB_RS04125 0.29 +0.3
864,951 + AMB_RS04125 0.29 -1.1
864,951 + AMB_RS04125 0.29 +0.4
864,951 + AMB_RS04125 0.29 -0.5
864,952 - AMB_RS04125 0.29 +0.3
864,952 - AMB_RS04125 0.29 -0.3
864,952 - AMB_RS04125 0.29 -0.4
864,952 - AMB_RS04125 0.29 -0.0
864,952 - AMB_RS04125 0.29 +0.6
865,063 - AMB_RS04125 0.44 +0.2
865,260 + AMB_RS04125 0.69 -0.3
865,261 - AMB_RS04125 0.69 -1.7
865,261 - AMB_RS04125 0.69 -2.0
865,261 - AMB_RS04125 0.69 +1.2
865,290 + AMB_RS04125 0.73 -1.3
865,290 + AMB_RS04125 0.73 +0.4
865,290 + AMB_RS04125 0.73 +0.4
865,290 + AMB_RS04125 0.73 -0.8
865,290 + AMB_RS04125 0.73 -1.7
865,356 + AMB_RS04125 0.81 +0.1
865,357 - AMB_RS04125 0.81 +0.4
865,357 - AMB_RS04125 0.81 -2.0
865,665 + AMB_RS04130 0.11 +0.0
865,665 + AMB_RS04130 0.11 -0.0
865,666 - AMB_RS04130 0.11 +0.0
865,666 - AMB_RS04130 0.11 -0.1
865,666 - AMB_RS04130 0.11 +0.5
865,666 - AMB_RS04130 0.11 -1.3
865,764 + AMB_RS04130 0.18 +0.2
865,765 - AMB_RS04130 0.18 +0.1
865,765 - AMB_RS04130 0.18 -0.0
865,854 + AMB_RS04130 0.25 -1.7
865,854 + AMB_RS04130 0.25 -2.1
865,854 + AMB_RS04130 0.25 +0.4
865,854 + AMB_RS04130 0.25 +0.7
865,854 + AMB_RS04130 0.25 -0.3
865,854 + AMB_RS04130 0.25 +0.6
865,854 + AMB_RS04130 0.25 -2.0
865,854 + AMB_RS04130 0.25 -2.2
865,854 + AMB_RS04130 0.25 +0.4
865,854 + AMB_RS04130 0.25 +0.5
865,854 + AMB_RS04130 0.25 +0.4
865,854 + AMB_RS04130 0.25 -0.4
865,854 + AMB_RS04130 0.25 -1.8
865,854 + AMB_RS04130 0.25 -0.8
865,855 - AMB_RS04130 0.25 -1.0
865,855 - AMB_RS04130 0.25 -0.5
865,855 - AMB_RS04130 0.25 -4.0
865,855 - AMB_RS04130 0.25 -0.8
865,855 - AMB_RS04130 0.25 -0.1
865,855 - AMB_RS04130 0.25 +0.5
866,018 + AMB_RS04130 0.37 -0.5
866,018 + AMB_RS04130 0.37 -2.3
866,127 + AMB_RS04130 0.46 -0.5
866,127 + AMB_RS04130 0.46 -2.7
866,127 + AMB_RS04130 0.46 +0.5
866,127 + AMB_RS04130 0.46 -1.8
866,128 - AMB_RS04130 0.46 +1.5
866,128 - AMB_RS04130 0.46 -1.7
866,128 - AMB_RS04130 0.46 +0.2
866,128 - AMB_RS04130 0.46 -2.7
866,128 - AMB_RS04130 0.46 +0.4
866,128 - AMB_RS04130 0.46 +0.7
866,128 - AMB_RS04130 0.46 +0.3
866,128 - AMB_RS04130 0.46 -3.0
866,128 - AMB_RS04130 0.46 -0.1
866,128 - AMB_RS04130 0.46 -0.5
866,269 + AMB_RS04130 0.56 -0.5
866,269 + AMB_RS04130 0.56 -0.1
866,269 + AMB_RS04130 0.56 -1.1
866,269 + AMB_RS04130 0.56 -1.3
866,269 + AMB_RS04130 0.56 -1.7
866,269 + AMB_RS04130 0.56 +0.3
866,269 + AMB_RS04130 0.56 -0.5
866,270 - AMB_RS04130 0.56 -0.8
866,271 + AMB_RS04130 0.57 -0.5
866,271 + AMB_RS04130 0.57 +0.0
866,271 + AMB_RS04130 0.57 -2.2
866,272 - AMB_RS04130 0.57 -2.7
866,272 - AMB_RS04130 0.57 -0.3
866,272 - AMB_RS04130 0.57 -1.1
866,272 - AMB_RS04130 0.57 -0.0
866,272 - AMB_RS04130 0.57 +0.7
866,272 - AMB_RS04130 0.57 +0.3
866,272 - AMB_RS04130 0.57 -0.5
866,272 - AMB_RS04130 0.57 -0.5
866,272 - AMB_RS04130 0.57 +1.5
866,272 - AMB_RS04130 0.57 -0.1
866,349 + AMB_RS04130 0.62 -1.5
866,349 + AMB_RS04130 0.62 -0.7
866,350 - AMB_RS04130 0.62 +0.5
866,350 - AMB_RS04130 0.62 -0.1
866,350 - AMB_RS04130 0.62 -0.5
866,433 + AMB_RS04130 0.69 +0.1
866,433 + AMB_RS04130 0.69 -0.5
866,433 + AMB_RS04130 0.69 -0.3
866,434 - AMB_RS04130 0.69 -0.4
866,541 + AMB_RS04130 0.77 -0.7
866,541 + AMB_RS04130 0.77 -1.7
866,542 - AMB_RS04130 0.77 -3.6
866,542 - AMB_RS04130 0.77 -0.8
866,664 + AMB_RS04130 0.86 -0.1
866,665 - AMB_RS04130 0.86 +0.6
866,682 + AMB_RS04130 0.87 -1.3
866,742 + -2.0
866,742 + -0.3
866,742 + +0.4
866,742 + -1.7
866,742 + +0.1
866,743 - +0.8
866,743 - -1.1
866,743 - +1.3
866,892 - -1.5
866,892 - -1.1
867,391 + -2.0
867,392 - -1.1
867,432 + +0.2
867,433 - +0.3
867,433 - -0.4
867,601 - AMB_RS04140 0.17 -0.1
867,711 + AMB_RS04140 0.27 -1.1
867,712 - AMB_RS04140 0.27 +0.5
867,786 + AMB_RS04140 0.33 +0.5
867,786 + AMB_RS04140 0.33 -1.3
867,787 - AMB_RS04140 0.34 -0.1
867,787 - AMB_RS04140 0.34 +0.2

Or see this region's nucleotide sequence