Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03025

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03020 and AMB_RS03025 are separated by 436 nucleotidesAMB_RS03025 and AMB_RS03030 overlap by 23 nucleotides AMB_RS03020: AMB_RS03020 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 631,887 to 632,738 _RS03020 AMB_RS03025: AMB_RS03025 - PAS domain-containing protein, at 633,175 to 633,699 _RS03025 AMB_RS03030: AMB_RS03030 - sensory rhodopsin II transducer, at 633,677 to 634,987 _RS03030 Position (kb) 633 634Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 632.307 kb on - strand, within AMB_RS03020at 632.308 kb on + strand, within AMB_RS03020at 632.309 kb on - strand, within AMB_RS03020at 632.309 kb on - strand, within AMB_RS03020at 632.309 kb on - strand, within AMB_RS03020at 632.309 kb on - strand, within AMB_RS03020at 632.309 kb on - strand, within AMB_RS03020at 632.309 kb on - strand, within AMB_RS03020at 632.309 kb on - strand, within AMB_RS03020at 632.500 kb on + strand, within AMB_RS03020at 632.500 kb on + strand, within AMB_RS03020at 632.500 kb on + strand, within AMB_RS03020at 632.500 kb on + strand, within AMB_RS03020at 632.500 kb on + strand, within AMB_RS03020at 632.501 kb on - strand, within AMB_RS03020at 632.501 kb on - strand, within AMB_RS03020at 632.501 kb on - strand, within AMB_RS03020at 632.501 kb on - strand, within AMB_RS03020at 632.560 kb on + strand, within AMB_RS03020at 632.561 kb on - strand, within AMB_RS03020at 632.561 kb on - strand, within AMB_RS03020at 632.599 kb on + strand, within AMB_RS03020at 632.600 kb on - strand, within AMB_RS03020at 632.600 kb on - strand, within AMB_RS03020at 632.600 kb on - strand, within AMB_RS03020at 632.719 kb on + strandat 632.719 kb on + strandat 632.720 kb on - strandat 632.720 kb on - strandat 632.731 kb on + strandat 632.779 kb on + strandat 632.779 kb on + strandat 632.780 kb on - strandat 632.780 kb on - strandat 632.823 kb on - strandat 632.825 kb on - strandat 632.871 kb on + strandat 632.875 kb on + strandat 632.876 kb on - strandat 632.899 kb on + strandat 632.944 kb on - strandat 632.944 kb on - strandat 632.949 kb on + strandat 632.950 kb on - strandat 632.950 kb on - strandat 632.950 kb on - strandat 632.950 kb on - strandat 632.950 kb on - strandat 632.950 kb on - strandat 633.028 kb on + strandat 633.029 kb on - strandat 633.064 kb on - strandat 633.088 kb on + strandat 633.140 kb on - strandat 633.193 kb on + strandat 633.194 kb on - strandat 633.194 kb on - strandat 633.214 kb on - strandat 633.271 kb on + strand, within AMB_RS03025at 633.272 kb on - strand, within AMB_RS03025at 633.272 kb on - strand, within AMB_RS03025at 633.272 kb on - strand, within AMB_RS03025at 633.421 kb on + strand, within AMB_RS03025at 633.421 kb on + strand, within AMB_RS03025at 633.422 kb on - strand, within AMB_RS03025at 633.422 kb on - strand, within AMB_RS03025at 633.422 kb on - strand, within AMB_RS03025at 633.422 kb on - strand, within AMB_RS03025at 633.425 kb on + strand, within AMB_RS03025at 633.425 kb on + strand, within AMB_RS03025at 633.425 kb on + strand, within AMB_RS03025at 633.426 kb on - strand, within AMB_RS03025at 633.426 kb on - strand, within AMB_RS03025at 633.426 kb on - strand, within AMB_RS03025at 633.426 kb on - strand, within AMB_RS03025at 633.426 kb on - strand, within AMB_RS03025at 633.426 kb on - strand, within AMB_RS03025at 633.454 kb on + strand, within AMB_RS03025at 633.455 kb on - strand, within AMB_RS03025at 633.455 kb on - strand, within AMB_RS03025at 633.501 kb on + strand, within AMB_RS03025at 633.501 kb on + strand, within AMB_RS03025at 633.511 kb on + strand, within AMB_RS03025at 633.511 kb on + strand, within AMB_RS03025at 633.511 kb on + strand, within AMB_RS03025at 633.511 kb on + strand, within AMB_RS03025at 633.512 kb on - strand, within AMB_RS03025at 633.512 kb on - strand, within AMB_RS03025at 633.569 kb on - strand, within AMB_RS03025at 633.761 kb on - strandat 634.037 kb on + strand, within AMB_RS03030at 634.038 kb on - strand, within AMB_RS03030at 634.038 kb on - strand, within AMB_RS03030at 634.049 kb on - strand, within AMB_RS03030at 634.302 kb on - strand, within AMB_RS03030at 634.302 kb on - strand, within AMB_RS03030at 634.302 kb on - strand, within AMB_RS03030at 634.655 kb on - strand, within AMB_RS03030at 634.655 kb on - strand, within AMB_RS03030

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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632,307 - AMB_RS03020 0.49 -0.6
632,308 + AMB_RS03020 0.49 -1.3
632,309 - AMB_RS03020 0.50 -0.5
632,309 - AMB_RS03020 0.50 -3.8
632,309 - AMB_RS03020 0.50 -0.0
632,309 - AMB_RS03020 0.50 -0.1
632,309 - AMB_RS03020 0.50 +0.5
632,309 - AMB_RS03020 0.50 +0.5
632,309 - AMB_RS03020 0.50 -1.8
632,500 + AMB_RS03020 0.72 -0.5
632,500 + AMB_RS03020 0.72 -0.9
632,500 + AMB_RS03020 0.72 +0.3
632,500 + AMB_RS03020 0.72 +1.5
632,500 + AMB_RS03020 0.72 -1.9
632,501 - AMB_RS03020 0.72 -0.5
632,501 - AMB_RS03020 0.72 +0.5
632,501 - AMB_RS03020 0.72 -1.1
632,501 - AMB_RS03020 0.72 +1.0
632,560 + AMB_RS03020 0.79 -2.7
632,561 - AMB_RS03020 0.79 -0.5
632,561 - AMB_RS03020 0.79 -0.5
632,599 + AMB_RS03020 0.84 +1.5
632,600 - AMB_RS03020 0.84 +0.5
632,600 - AMB_RS03020 0.84 -0.1
632,600 - AMB_RS03020 0.84 -0.2
632,719 + -0.0
632,719 + -2.1
632,720 - -0.1
632,720 - -0.1
632,731 + -0.9
632,779 + -0.2
632,779 + -0.5
632,780 - +0.2
632,780 - -1.3
632,823 - -0.4
632,825 - -2.6
632,871 + +0.3
632,875 + +0.5
632,876 - -0.7
632,899 + -0.6
632,944 - -0.9
632,944 - -0.5
632,949 + -2.6
632,950 - +0.2
632,950 - -1.2
632,950 - -0.2
632,950 - +0.6
632,950 - +0.5
632,950 - -0.8
633,028 + -0.1
633,029 - +0.1
633,064 - -0.8
633,088 + -0.5
633,140 - -0.3
633,193 + +0.2
633,194 - -1.1
633,194 - -0.8
633,214 - +0.2
633,271 + AMB_RS03025 0.18 -0.1
633,272 - AMB_RS03025 0.18 -0.1
633,272 - AMB_RS03025 0.18 -1.7
633,272 - AMB_RS03025 0.18 +0.1
633,421 + AMB_RS03025 0.47 +0.2
633,421 + AMB_RS03025 0.47 -1.7
633,422 - AMB_RS03025 0.47 -0.7
633,422 - AMB_RS03025 0.47 -1.9
633,422 - AMB_RS03025 0.47 -0.6
633,422 - AMB_RS03025 0.47 +0.4
633,425 + AMB_RS03025 0.48 -0.2
633,425 + AMB_RS03025 0.48 -0.2
633,425 + AMB_RS03025 0.48 +0.1
633,426 - AMB_RS03025 0.48 -0.1
633,426 - AMB_RS03025 0.48 -0.8
633,426 - AMB_RS03025 0.48 -0.1
633,426 - AMB_RS03025 0.48 +0.6
633,426 - AMB_RS03025 0.48 -0.1
633,426 - AMB_RS03025 0.48 -0.5
633,454 + AMB_RS03025 0.53 -0.1
633,455 - AMB_RS03025 0.53 -1.5
633,455 - AMB_RS03025 0.53 -1.1
633,501 + AMB_RS03025 0.62 +0.6
633,501 + AMB_RS03025 0.62 -1.9
633,511 + AMB_RS03025 0.64 -2.1
633,511 + AMB_RS03025 0.64 -2.0
633,511 + AMB_RS03025 0.64 -1.9
633,511 + AMB_RS03025 0.64 -1.9
633,512 - AMB_RS03025 0.64 -2.1
633,512 - AMB_RS03025 0.64 -0.5
633,569 - AMB_RS03025 0.75 -2.5
633,761 - -1.5
634,037 + AMB_RS03030 0.27 +0.2
634,038 - AMB_RS03030 0.28 -0.3
634,038 - AMB_RS03030 0.28 -0.0
634,049 - AMB_RS03030 0.28 -2.7
634,302 - AMB_RS03030 0.48 -0.1
634,302 - AMB_RS03030 0.48 +0.2
634,302 - AMB_RS03030 0.48 -1.3
634,655 - AMB_RS03030 0.75 -0.1
634,655 - AMB_RS03030 0.75 -1.9

Or see this region's nucleotide sequence