Experiment: 30_an_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01880 and AMB_RS01885 are separated by 70 nucleotides AMB_RS01885 and AMB_RS01890 overlap by 53 nucleotides AMB_RS01890 and AMB_RS01895 are separated by 2 nucleotides AMB_RS01895 and AMB_RS01900 are separated by 2 nucleotides
AMB_RS01880: AMB_RS01880 - hypothetical protein, at 401,115 to 401,507
_RS01880
AMB_RS01885: AMB_RS01885 - hypothetical protein, at 401,578 to 402,129
_RS01885
AMB_RS01890: AMB_RS01890 - phage terminase large subunit family protein, at 402,077 to 404,062
_RS01890
AMB_RS01895: AMB_RS01895 - hypothetical protein, at 404,065 to 404,274
_RS01895
AMB_RS01900: AMB_RS01900 - phage portal protein, at 404,277 to 405,707
_RS01900
Position (kb) 402
403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 401.077 kb on - strand at 401.077 kb on - strand at 401.077 kb on - strand at 401.167 kb on + strand, within AMB_RS01880 at 401.168 kb on - strand, within AMB_RS01880 at 401.168 kb on - strand, within AMB_RS01880 at 401.543 kb on - strand at 401.566 kb on - strand at 401.599 kb on + strand at 401.599 kb on + strand at 401.599 kb on + strand at 401.599 kb on + strand at 401.600 kb on - strand at 401.600 kb on - strand at 401.600 kb on - strand at 401.600 kb on - strand at 401.743 kb on - strand, within AMB_RS01885 at 401.790 kb on + strand, within AMB_RS01885 at 401.790 kb on + strand, within AMB_RS01885 at 401.790 kb on + strand, within AMB_RS01885 at 401.791 kb on - strand, within AMB_RS01885 at 401.791 kb on - strand, within AMB_RS01885 at 401.791 kb on - strand, within AMB_RS01885 at 401.791 kb on - strand, within AMB_RS01885 at 401.791 kb on - strand, within AMB_RS01885 at 401.809 kb on - strand, within AMB_RS01885 at 402.135 kb on - strand at 402.135 kb on - strand at 402.291 kb on - strand, within AMB_RS01890 at 402.291 kb on - strand, within AMB_RS01890 at 402.334 kb on - strand, within AMB_RS01890 at 402.556 kb on + strand, within AMB_RS01890 at 402.557 kb on - strand, within AMB_RS01890 at 402.557 kb on - strand, within AMB_RS01890 at 402.672 kb on - strand, within AMB_RS01890 at 402.807 kb on - strand, within AMB_RS01890 at 402.807 kb on - strand, within AMB_RS01890 at 402.920 kb on + strand, within AMB_RS01890 at 402.921 kb on - strand, within AMB_RS01890 at 402.921 kb on - strand, within AMB_RS01890 at 403.021 kb on + strand, within AMB_RS01890 at 403.049 kb on + strand, within AMB_RS01890 at 403.049 kb on + strand, within AMB_RS01890 at 403.049 kb on + strand, within AMB_RS01890 at 403.050 kb on - strand, within AMB_RS01890 at 403.050 kb on - strand, within AMB_RS01890 at 403.050 kb on - strand, within AMB_RS01890 at 403.469 kb on + strand, within AMB_RS01890 at 403.487 kb on + strand, within AMB_RS01890 at 403.512 kb on + strand, within AMB_RS01890 at 403.512 kb on + strand, within AMB_RS01890 at 403.513 kb on - strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.581 kb on - strand, within AMB_RS01890 at 403.581 kb on - strand, within AMB_RS01890 at 403.581 kb on - strand, within AMB_RS01890 at 403.581 kb on - strand, within AMB_RS01890 at 403.667 kb on + strand, within AMB_RS01890 at 403.668 kb on - strand, within AMB_RS01890 at 403.668 kb on - strand, within AMB_RS01890 at 403.668 kb on - strand, within AMB_RS01890 at 403.673 kb on + strand, within AMB_RS01890 at 403.673 kb on + strand, within AMB_RS01890 at 403.674 kb on - strand, within AMB_RS01890 at 403.883 kb on + strand at 403.884 kb on - strand at 404.161 kb on + strand, within AMB_RS01895 at 404.161 kb on + strand, within AMB_RS01895 at 404.208 kb on + strand, within AMB_RS01895 at 404.430 kb on + strand, within AMB_RS01900 at 404.451 kb on + strand, within AMB_RS01900 at 404.451 kb on + strand, within AMB_RS01900 at 404.823 kb on + strand, within AMB_RS01900 at 404.824 kb on - strand, within AMB_RS01900 at 404.997 kb on + strand, within AMB_RS01900 at 404.998 kb on - strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_1 remove 401,077 - -0.0 401,077 - -2.5 401,077 - +0.4 401,167 + AMB_RS01880 0.13 -2.8 401,168 - AMB_RS01880 0.13 -1.9 401,168 - AMB_RS01880 0.13 -0.0 401,543 - -0.4 401,566 - +0.1 401,599 + +0.2 401,599 + +0.1 401,599 + -0.1 401,599 + +0.5 401,600 - -0.6 401,600 - -0.3 401,600 - -1.0 401,600 - -0.4 401,743 - AMB_RS01885 0.30 -0.1 401,790 + AMB_RS01885 0.38 +0.4 401,790 + AMB_RS01885 0.38 +0.5 401,790 + AMB_RS01885 0.38 -0.2 401,791 - AMB_RS01885 0.39 -0.8 401,791 - AMB_RS01885 0.39 -0.2 401,791 - AMB_RS01885 0.39 +0.5 401,791 - AMB_RS01885 0.39 +0.0 401,791 - AMB_RS01885 0.39 -1.0 401,809 - AMB_RS01885 0.42 -0.7 402,135 - -0.3 402,135 - -0.4 402,291 - AMB_RS01890 0.11 -2.7 402,291 - AMB_RS01890 0.11 -0.4 402,334 - AMB_RS01890 0.13 -0.4 402,556 + AMB_RS01890 0.24 +0.5 402,557 - AMB_RS01890 0.24 +1.6 402,557 - AMB_RS01890 0.24 +0.2 402,672 - AMB_RS01890 0.30 +0.6 402,807 - AMB_RS01890 0.37 -0.3 402,807 - AMB_RS01890 0.37 -0.5 402,920 + AMB_RS01890 0.42 -1.2 402,921 - AMB_RS01890 0.42 -1.6 402,921 - AMB_RS01890 0.42 -0.0 403,021 + AMB_RS01890 0.48 -0.9 403,049 + AMB_RS01890 0.49 -1.0 403,049 + AMB_RS01890 0.49 -0.7 403,049 + AMB_RS01890 0.49 -0.0 403,050 - AMB_RS01890 0.49 -2.7 403,050 - AMB_RS01890 0.49 -2.7 403,050 - AMB_RS01890 0.49 -1.5 403,469 + AMB_RS01890 0.70 -0.3 403,487 + AMB_RS01890 0.71 +0.4 403,512 + AMB_RS01890 0.72 +0.5 403,512 + AMB_RS01890 0.72 -0.0 403,513 - AMB_RS01890 0.72 -1.2 403,580 + AMB_RS01890 0.76 -1.2 403,580 + AMB_RS01890 0.76 -1.4 403,580 + AMB_RS01890 0.76 +0.0 403,580 + AMB_RS01890 0.76 -0.7 403,580 + AMB_RS01890 0.76 -1.0 403,580 + AMB_RS01890 0.76 +0.1 403,580 + AMB_RS01890 0.76 +0.1 403,580 + AMB_RS01890 0.76 -0.7 403,580 + AMB_RS01890 0.76 -2.0 403,580 + AMB_RS01890 0.76 +0.9 403,580 + AMB_RS01890 0.76 -1.0 403,581 - AMB_RS01890 0.76 -0.6 403,581 - AMB_RS01890 0.76 -0.2 403,581 - AMB_RS01890 0.76 -0.0 403,581 - AMB_RS01890 0.76 +1.4 403,667 + AMB_RS01890 0.80 -1.7 403,668 - AMB_RS01890 0.80 -0.2 403,668 - AMB_RS01890 0.80 -1.6 403,668 - AMB_RS01890 0.80 -0.1 403,673 + AMB_RS01890 0.80 +0.1 403,673 + AMB_RS01890 0.80 -1.2 403,674 - AMB_RS01890 0.80 -1.4 403,883 + -1.4 403,884 - -0.7 404,161 + AMB_RS01895 0.46 -1.6 404,161 + AMB_RS01895 0.46 -1.0 404,208 + AMB_RS01895 0.68 -0.2 404,430 + AMB_RS01900 0.11 -1.0 404,451 + AMB_RS01900 0.12 -0.1 404,451 + AMB_RS01900 0.12 +0.6 404,823 + AMB_RS01900 0.38 -1.0 404,824 - AMB_RS01900 0.38 +1.6 404,997 + AMB_RS01900 0.50 +0.6 404,998 - AMB_RS01900 0.50 +0.6 405,039 + AMB_RS01900 0.53 +0.7 405,039 + AMB_RS01900 0.53 +1.1 405,039 + AMB_RS01900 0.53 -0.0 405,039 + AMB_RS01900 0.53 +0.4 405,039 + AMB_RS01900 0.53 -0.4 405,040 - AMB_RS01900 0.53 -1.6 405,040 - AMB_RS01900 0.53 +0.6 405,040 - AMB_RS01900 0.53 +0.2 405,040 - AMB_RS01900 0.53 -2.7 405,040 - AMB_RS01900 0.53 -0.1
Or see this region's nucleotide sequence