Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01555

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01550 and AMB_RS01555 are separated by 104 nucleotidesAMB_RS01555 and AMB_RS01560 are separated by 207 nucleotides AMB_RS01550: AMB_RS01550 - hypothetical protein, at 344,452 to 345,450 _RS01550 AMB_RS01555: AMB_RS01555 - hypothetical protein, at 345,555 to 346,148 _RS01555 AMB_RS01560: AMB_RS01560 - acyl-CoA dehydrogenase, at 346,356 to 348,017 _RS01560 Position (kb) 345 346 347Strain fitness (log2 ratio) -3 -2 -1 0 1at 344.624 kb on + strand, within AMB_RS01550at 344.624 kb on + strand, within AMB_RS01550at 344.625 kb on - strand, within AMB_RS01550at 344.633 kb on + strand, within AMB_RS01550at 344.633 kb on + strand, within AMB_RS01550at 344.633 kb on + strand, within AMB_RS01550at 344.633 kb on + strand, within AMB_RS01550at 344.633 kb on + strand, within AMB_RS01550at 344.633 kb on + strand, within AMB_RS01550at 344.634 kb on - strand, within AMB_RS01550at 344.634 kb on - strand, within AMB_RS01550at 344.634 kb on - strand, within AMB_RS01550at 344.634 kb on - strand, within AMB_RS01550at 344.699 kb on + strand, within AMB_RS01550at 344.699 kb on + strand, within AMB_RS01550at 344.699 kb on + strand, within AMB_RS01550at 344.699 kb on + strand, within AMB_RS01550at 344.699 kb on + strand, within AMB_RS01550at 344.699 kb on + strand, within AMB_RS01550at 344.700 kb on - strand, within AMB_RS01550at 344.700 kb on - strand, within AMB_RS01550at 344.700 kb on - strand, within AMB_RS01550at 344.909 kb on + strand, within AMB_RS01550at 345.086 kb on - strand, within AMB_RS01550at 345.178 kb on - strand, within AMB_RS01550at 345.182 kb on + strand, within AMB_RS01550at 345.182 kb on + strand, within AMB_RS01550at 345.183 kb on - strand, within AMB_RS01550at 345.183 kb on - strand, within AMB_RS01550at 345.446 kb on + strandat 345.446 kb on + strandat 345.446 kb on + strandat 345.446 kb on + strandat 345.446 kb on + strandat 345.446 kb on + strandat 345.447 kb on - strandat 345.447 kb on - strandat 345.447 kb on - strandat 345.447 kb on - strandat 345.481 kb on + strandat 345.481 kb on + strandat 345.481 kb on + strandat 345.481 kb on + strandat 345.481 kb on + strandat 345.481 kb on + strandat 345.482 kb on - strandat 345.482 kb on - strandat 345.482 kb on - strandat 345.482 kb on - strandat 345.482 kb on - strandat 345.556 kb on + strandat 345.556 kb on + strandat 345.556 kb on + strandat 345.556 kb on + strandat 345.556 kb on + strandat 345.782 kb on - strand, within AMB_RS01555at 345.782 kb on - strand, within AMB_RS01555at 346.164 kb on + strandat 346.164 kb on + strandat 346.165 kb on - strandat 346.238 kb on + strandat 346.238 kb on + strandat 346.238 kb on + strandat 346.239 kb on - strandat 346.308 kb on - strandat 346.354 kb on + strandat 346.355 kb on - strandat 346.355 kb on - strandat 346.355 kb on - strandat 346.355 kb on - strandat 346.355 kb on - strandat 346.355 kb on - strandat 346.355 kb on - strandat 346.357 kb on + strandat 346.357 kb on + strandat 346.358 kb on - strandat 346.358 kb on - strandat 346.468 kb on + strandat 346.480 kb on + strandat 346.480 kb on + strandat 346.480 kb on + strandat 346.609 kb on + strand, within AMB_RS01560at 346.610 kb on - strand, within AMB_RS01560at 346.610 kb on - strand, within AMB_RS01560at 346.610 kb on - strand, within AMB_RS01560at 346.681 kb on + strand, within AMB_RS01560at 346.681 kb on + strand, within AMB_RS01560at 346.681 kb on + strand, within AMB_RS01560at 346.681 kb on + strand, within AMB_RS01560at 346.682 kb on - strand, within AMB_RS01560at 346.682 kb on - strand, within AMB_RS01560at 346.682 kb on - strand, within AMB_RS01560at 346.682 kb on - strand, within AMB_RS01560at 346.717 kb on + strand, within AMB_RS01560at 346.717 kb on + strand, within AMB_RS01560at 346.717 kb on + strand, within AMB_RS01560at 346.882 kb on + strand, within AMB_RS01560at 346.882 kb on + strand, within AMB_RS01560at 346.883 kb on - strand, within AMB_RS01560at 346.883 kb on - strand, within AMB_RS01560at 347.095 kb on + strand, within AMB_RS01560at 347.095 kb on + strand, within AMB_RS01560at 347.095 kb on + strand, within AMB_RS01560at 347.095 kb on + strand, within AMB_RS01560at 347.095 kb on + strand, within AMB_RS01560at 347.095 kb on + strand, within AMB_RS01560at 347.095 kb on + strand, within AMB_RS01560at 347.095 kb on + strand, within AMB_RS01560at 347.096 kb on - strand, within AMB_RS01560at 347.096 kb on - strand, within AMB_RS01560at 347.096 kb on - strand, within AMB_RS01560at 347.096 kb on - strand, within AMB_RS01560at 347.096 kb on - strand, within AMB_RS01560at 347.096 kb on - strand, within AMB_RS01560

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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344,624 + AMB_RS01550 0.17 -1.6
344,624 + AMB_RS01550 0.17 -1.9
344,625 - AMB_RS01550 0.17 -2.7
344,633 + AMB_RS01550 0.18 +0.1
344,633 + AMB_RS01550 0.18 -1.2
344,633 + AMB_RS01550 0.18 -0.0
344,633 + AMB_RS01550 0.18 -0.1
344,633 + AMB_RS01550 0.18 -0.1
344,633 + AMB_RS01550 0.18 +0.4
344,634 - AMB_RS01550 0.18 -0.5
344,634 - AMB_RS01550 0.18 -0.1
344,634 - AMB_RS01550 0.18 +0.2
344,634 - AMB_RS01550 0.18 +1.0
344,699 + AMB_RS01550 0.25 +0.5
344,699 + AMB_RS01550 0.25 -0.2
344,699 + AMB_RS01550 0.25 -1.0
344,699 + AMB_RS01550 0.25 -0.2
344,699 + AMB_RS01550 0.25 +0.6
344,699 + AMB_RS01550 0.25 -2.3
344,700 - AMB_RS01550 0.25 -1.9
344,700 - AMB_RS01550 0.25 -0.4
344,700 - AMB_RS01550 0.25 -0.4
344,909 + AMB_RS01550 0.46 +0.8
345,086 - AMB_RS01550 0.63 -1.4
345,178 - AMB_RS01550 0.73 -2.4
345,182 + AMB_RS01550 0.73 -0.7
345,182 + AMB_RS01550 0.73 -1.1
345,183 - AMB_RS01550 0.73 -1.1
345,183 - AMB_RS01550 0.73 +0.0
345,446 + -1.4
345,446 + -0.2
345,446 + -1.9
345,446 + -0.4
345,446 + -0.2
345,446 + -2.6
345,447 - +0.3
345,447 - -0.3
345,447 - -2.0
345,447 - +0.2
345,481 + -0.0
345,481 + -1.0
345,481 + +0.4
345,481 + -0.1
345,481 + -2.8
345,481 + -0.7
345,482 - -0.3
345,482 - +0.6
345,482 - -3.3
345,482 - -0.4
345,482 - -0.5
345,556 + -0.1
345,556 + +0.1
345,556 + -1.9
345,556 + -2.3
345,556 + +0.9
345,782 - AMB_RS01555 0.38 +0.1
345,782 - AMB_RS01555 0.38 -0.9
346,164 + -0.4
346,164 + -1.0
346,165 - -1.7
346,238 + -0.7
346,238 + -0.6
346,238 + +1.0
346,239 - +0.4
346,308 - -1.7
346,354 + +0.0
346,355 - +0.4
346,355 - -1.2
346,355 - -0.1
346,355 - -1.1
346,355 - +0.4
346,355 - -0.3
346,355 - -0.4
346,357 + +0.6
346,357 + -0.4
346,358 - -1.5
346,358 - +0.0
346,468 + -1.7
346,480 + +0.6
346,480 + -1.6
346,480 + +0.3
346,609 + AMB_RS01560 0.15 -0.1
346,610 - AMB_RS01560 0.15 -1.4
346,610 - AMB_RS01560 0.15 +0.9
346,610 - AMB_RS01560 0.15 +0.7
346,681 + AMB_RS01560 0.20 -0.7
346,681 + AMB_RS01560 0.20 -0.4
346,681 + AMB_RS01560 0.20 -0.9
346,681 + AMB_RS01560 0.20 -1.2
346,682 - AMB_RS01560 0.20 +0.1
346,682 - AMB_RS01560 0.20 +1.0
346,682 - AMB_RS01560 0.20 -1.0
346,682 - AMB_RS01560 0.20 +0.0
346,717 + AMB_RS01560 0.22 -1.0
346,717 + AMB_RS01560 0.22 +0.7
346,717 + AMB_RS01560 0.22 -0.4
346,882 + AMB_RS01560 0.32 +0.1
346,882 + AMB_RS01560 0.32 -1.4
346,883 - AMB_RS01560 0.32 -0.4
346,883 - AMB_RS01560 0.32 -1.7
347,095 + AMB_RS01560 0.44 +0.0
347,095 + AMB_RS01560 0.44 -1.0
347,095 + AMB_RS01560 0.44 -0.5
347,095 + AMB_RS01560 0.44 +0.0
347,095 + AMB_RS01560 0.44 -1.4
347,095 + AMB_RS01560 0.44 -1.4
347,095 + AMB_RS01560 0.44 -0.4
347,095 + AMB_RS01560 0.44 +0.3
347,096 - AMB_RS01560 0.45 -0.1
347,096 - AMB_RS01560 0.45 -0.0
347,096 - AMB_RS01560 0.45 -0.1
347,096 - AMB_RS01560 0.45 -1.2
347,096 - AMB_RS01560 0.45 -1.4
347,096 - AMB_RS01560 0.45 +1.6

Or see this region's nucleotide sequence