Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01215

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01205 and AMB_RS01210 are separated by 17 nucleotidesAMB_RS01210 and AMB_RS01215 are separated by 147 nucleotidesAMB_RS01215 and AMB_RS01220 are separated by 13 nucleotides AMB_RS01205: AMB_RS01205 - nucleoside deaminase, at 267,400 to 267,828 _RS01205 AMB_RS01210: AMB_RS01210 - FCD domain-containing protein, at 267,846 to 268,622 _RS01210 AMB_RS01215: AMB_RS01215 - pyruvate carboxylase, at 268,770 to 272,234 _RS01215 AMB_RS01220: AMB_RS01220 - hypothetical protein, at 272,248 to 273,783 _RS01220 Position (kb) 268 269 270 271 272 273Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 268.079 kb on - strand, within AMB_RS01210at 268.639 kb on - strandat 268.652 kb on - strandat 268.672 kb on + strandat 268.673 kb on - strandat 268.694 kb on + strandat 268.713 kb on + strandat 268.714 kb on - strandat 268.890 kb on + strandat 268.890 kb on + strandat 268.890 kb on + strandat 268.890 kb on + strandat 268.891 kb on - strandat 268.891 kb on - strandat 268.891 kb on - strandat 268.891 kb on - strandat 268.891 kb on - strandat 268.941 kb on + strandat 268.942 kb on - strandat 268.977 kb on + strandat 268.977 kb on + strandat 268.977 kb on + strandat 269.391 kb on + strand, within AMB_RS01215at 269.391 kb on + strand, within AMB_RS01215at 269.392 kb on - strand, within AMB_RS01215at 269.392 kb on - strand, within AMB_RS01215at 269.472 kb on + strand, within AMB_RS01215at 269.472 kb on + strand, within AMB_RS01215at 269.655 kb on + strand, within AMB_RS01215at 269.656 kb on - strand, within AMB_RS01215at 269.656 kb on - strand, within AMB_RS01215at 269.841 kb on - strand, within AMB_RS01215at 269.875 kb on - strand, within AMB_RS01215at 269.892 kb on + strand, within AMB_RS01215at 269.964 kb on + strand, within AMB_RS01215at 269.967 kb on + strand, within AMB_RS01215at 269.967 kb on + strand, within AMB_RS01215at 269.967 kb on + strand, within AMB_RS01215at 269.967 kb on + strand, within AMB_RS01215at 269.968 kb on - strand, within AMB_RS01215at 269.968 kb on - strand, within AMB_RS01215at 269.968 kb on - strand, within AMB_RS01215at 269.968 kb on - strand, within AMB_RS01215at 269.968 kb on - strand, within AMB_RS01215at 270.129 kb on + strand, within AMB_RS01215at 270.129 kb on + strand, within AMB_RS01215at 270.130 kb on - strand, within AMB_RS01215at 270.407 kb on + strand, within AMB_RS01215at 270.407 kb on + strand, within AMB_RS01215at 270.407 kb on + strand, within AMB_RS01215at 270.407 kb on + strand, within AMB_RS01215at 270.407 kb on + strand, within AMB_RS01215at 270.408 kb on - strand, within AMB_RS01215at 270.408 kb on - strand, within AMB_RS01215at 270.408 kb on - strand, within AMB_RS01215at 270.408 kb on - strand, within AMB_RS01215at 270.484 kb on - strand, within AMB_RS01215at 270.654 kb on + strand, within AMB_RS01215at 270.655 kb on - strand, within AMB_RS01215at 270.655 kb on - strand, within AMB_RS01215at 270.820 kb on - strand, within AMB_RS01215at 270.820 kb on - strand, within AMB_RS01215at 270.855 kb on + strand, within AMB_RS01215at 270.855 kb on + strand, within AMB_RS01215at 270.855 kb on + strand, within AMB_RS01215at 270.855 kb on + strand, within AMB_RS01215at 270.856 kb on - strand, within AMB_RS01215at 270.856 kb on - strand, within AMB_RS01215at 270.867 kb on + strand, within AMB_RS01215at 270.867 kb on + strand, within AMB_RS01215at 270.867 kb on + strand, within AMB_RS01215at 270.867 kb on + strand, within AMB_RS01215at 270.867 kb on + strand, within AMB_RS01215at 270.867 kb on + strand, within AMB_RS01215at 270.867 kb on + strand, within AMB_RS01215at 270.867 kb on + strand, within AMB_RS01215at 270.868 kb on - strand, within AMB_RS01215at 270.868 kb on - strand, within AMB_RS01215at 270.868 kb on - strand, within AMB_RS01215at 270.868 kb on - strand, within AMB_RS01215at 270.868 kb on - strand, within AMB_RS01215at 270.870 kb on + strand, within AMB_RS01215at 270.870 kb on + strand, within AMB_RS01215at 270.870 kb on + strand, within AMB_RS01215at 270.871 kb on - strand, within AMB_RS01215at 270.871 kb on - strand, within AMB_RS01215at 270.871 kb on - strand, within AMB_RS01215at 270.871 kb on - strand, within AMB_RS01215at 271.023 kb on - strand, within AMB_RS01215at 271.193 kb on - strand, within AMB_RS01215at 271.233 kb on + strand, within AMB_RS01215at 271.233 kb on + strand, within AMB_RS01215at 271.278 kb on + strand, within AMB_RS01215at 271.278 kb on + strand, within AMB_RS01215at 271.278 kb on + strand, within AMB_RS01215at 271.305 kb on + strand, within AMB_RS01215at 271.305 kb on + strand, within AMB_RS01215at 271.305 kb on + strand, within AMB_RS01215at 271.306 kb on - strand, within AMB_RS01215at 271.306 kb on - strand, within AMB_RS01215at 271.374 kb on + strand, within AMB_RS01215at 271.374 kb on + strand, within AMB_RS01215at 271.374 kb on + strand, within AMB_RS01215at 271.375 kb on - strand, within AMB_RS01215at 271.375 kb on - strand, within AMB_RS01215at 271.375 kb on - strand, within AMB_RS01215at 271.722 kb on + strand, within AMB_RS01215at 271.722 kb on + strand, within AMB_RS01215at 271.723 kb on - strand, within AMB_RS01215at 271.731 kb on + strand, within AMB_RS01215at 271.731 kb on + strand, within AMB_RS01215at 271.731 kb on + strand, within AMB_RS01215at 271.732 kb on - strand, within AMB_RS01215at 271.732 kb on - strand, within AMB_RS01215at 271.732 kb on - strand, within AMB_RS01215at 271.732 kb on - strand, within AMB_RS01215at 271.773 kb on + strand, within AMB_RS01215at 271.878 kb on + strand, within AMB_RS01215at 271.878 kb on + strand, within AMB_RS01215at 271.879 kb on - strand, within AMB_RS01215at 272.232 kb on + strandat 272.232 kb on + strandat 272.232 kb on + strandat 272.233 kb on - strandat 272.233 kb on - strandat 272.326 kb on - strandat 272.350 kb on + strandat 272.443 kb on - strand, within AMB_RS01220at 272.497 kb on + strand, within AMB_RS01220at 272.497 kb on + strand, within AMB_RS01220at 272.530 kb on + strand, within AMB_RS01220at 272.530 kb on + strand, within AMB_RS01220at 272.530 kb on + strand, within AMB_RS01220at 272.530 kb on + strand, within AMB_RS01220at 272.530 kb on + strand, within AMB_RS01220at 272.531 kb on - strand, within AMB_RS01220at 272.531 kb on - strand, within AMB_RS01220at 272.531 kb on - strand, within AMB_RS01220at 272.548 kb on + strand, within AMB_RS01220at 272.800 kb on + strand, within AMB_RS01220at 272.800 kb on + strand, within AMB_RS01220at 272.800 kb on + strand, within AMB_RS01220at 272.800 kb on + strand, within AMB_RS01220at 272.950 kb on + strand, within AMB_RS01220at 272.950 kb on + strand, within AMB_RS01220at 272.951 kb on - strand, within AMB_RS01220at 272.951 kb on - strand, within AMB_RS01220at 272.951 kb on - strand, within AMB_RS01220at 272.951 kb on - strand, within AMB_RS01220at 272.955 kb on + strand, within AMB_RS01220at 272.956 kb on - strand, within AMB_RS01220at 272.956 kb on - strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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268,079 - AMB_RS01210 0.30 +0.6
268,639 - -0.3
268,652 - +0.6
268,672 + -1.8
268,673 - -0.2
268,694 + -0.2
268,713 + +0.4
268,714 - +0.1
268,890 + -0.4
268,890 + +0.1
268,890 + +0.2
268,890 + +0.1
268,891 - -0.2
268,891 - -1.2
268,891 - +0.1
268,891 - -0.1
268,891 - +0.2
268,941 + -1.7
268,942 - -0.7
268,977 + -1.7
268,977 + -0.9
268,977 + -1.5
269,391 + AMB_RS01215 0.18 -0.7
269,391 + AMB_RS01215 0.18 +0.1
269,392 - AMB_RS01215 0.18 -1.5
269,392 - AMB_RS01215 0.18 -1.2
269,472 + AMB_RS01215 0.20 -0.1
269,472 + AMB_RS01215 0.20 +0.6
269,655 + AMB_RS01215 0.26 -1.2
269,656 - AMB_RS01215 0.26 -0.7
269,656 - AMB_RS01215 0.26 -1.3
269,841 - AMB_RS01215 0.31 -1.2
269,875 - AMB_RS01215 0.32 -0.2
269,892 + AMB_RS01215 0.32 +0.6
269,964 + AMB_RS01215 0.34 +0.0
269,967 + AMB_RS01215 0.35 -2.3
269,967 + AMB_RS01215 0.35 +0.0
269,967 + AMB_RS01215 0.35 -1.9
269,967 + AMB_RS01215 0.35 -0.0
269,968 - AMB_RS01215 0.35 -0.3
269,968 - AMB_RS01215 0.35 -1.4
269,968 - AMB_RS01215 0.35 -1.4
269,968 - AMB_RS01215 0.35 +0.1
269,968 - AMB_RS01215 0.35 +0.3
270,129 + AMB_RS01215 0.39 -1.5
270,129 + AMB_RS01215 0.39 -1.4
270,130 - AMB_RS01215 0.39 -1.9
270,407 + AMB_RS01215 0.47 -0.4
270,407 + AMB_RS01215 0.47 -1.7
270,407 + AMB_RS01215 0.47 +0.2
270,407 + AMB_RS01215 0.47 -0.4
270,407 + AMB_RS01215 0.47 +0.1
270,408 - AMB_RS01215 0.47 +0.6
270,408 - AMB_RS01215 0.47 +0.1
270,408 - AMB_RS01215 0.47 +0.3
270,408 - AMB_RS01215 0.47 +0.2
270,484 - AMB_RS01215 0.49 +0.2
270,654 + AMB_RS01215 0.54 +0.0
270,655 - AMB_RS01215 0.54 -1.4
270,655 - AMB_RS01215 0.54 -0.4
270,820 - AMB_RS01215 0.59 -0.2
270,820 - AMB_RS01215 0.59 -0.9
270,855 + AMB_RS01215 0.60 -0.4
270,855 + AMB_RS01215 0.60 +0.6
270,855 + AMB_RS01215 0.60 -0.2
270,855 + AMB_RS01215 0.60 -1.5
270,856 - AMB_RS01215 0.60 +0.1
270,856 - AMB_RS01215 0.60 -1.8
270,867 + AMB_RS01215 0.61 -0.4
270,867 + AMB_RS01215 0.61 -0.9
270,867 + AMB_RS01215 0.61 +0.6
270,867 + AMB_RS01215 0.61 +0.2
270,867 + AMB_RS01215 0.61 +0.6
270,867 + AMB_RS01215 0.61 -1.5
270,867 + AMB_RS01215 0.61 +0.6
270,867 + AMB_RS01215 0.61 +0.2
270,868 - AMB_RS01215 0.61 +0.6
270,868 - AMB_RS01215 0.61 -0.1
270,868 - AMB_RS01215 0.61 -0.2
270,868 - AMB_RS01215 0.61 +0.1
270,868 - AMB_RS01215 0.61 -2.3
270,870 + AMB_RS01215 0.61 +0.1
270,870 + AMB_RS01215 0.61 -0.2
270,870 + AMB_RS01215 0.61 +0.1
270,871 - AMB_RS01215 0.61 -1.2
270,871 - AMB_RS01215 0.61 -0.7
270,871 - AMB_RS01215 0.61 +0.1
270,871 - AMB_RS01215 0.61 -0.1
271,023 - AMB_RS01215 0.65 -0.0
271,193 - AMB_RS01215 0.70 +1.6
271,233 + AMB_RS01215 0.71 +0.3
271,233 + AMB_RS01215 0.71 +0.2
271,278 + AMB_RS01215 0.72 -0.7
271,278 + AMB_RS01215 0.72 -2.3
271,278 + AMB_RS01215 0.72 +0.6
271,305 + AMB_RS01215 0.73 +0.4
271,305 + AMB_RS01215 0.73 -1.5
271,305 + AMB_RS01215 0.73 -0.0
271,306 - AMB_RS01215 0.73 +0.2
271,306 - AMB_RS01215 0.73 -0.4
271,374 + AMB_RS01215 0.75 -1.3
271,374 + AMB_RS01215 0.75 -0.1
271,374 + AMB_RS01215 0.75 +0.3
271,375 - AMB_RS01215 0.75 +0.3
271,375 - AMB_RS01215 0.75 +0.1
271,375 - AMB_RS01215 0.75 -0.0
271,722 + AMB_RS01215 0.85 -1.1
271,722 + AMB_RS01215 0.85 +1.3
271,723 - AMB_RS01215 0.85 +0.1
271,731 + AMB_RS01215 0.85 -2.5
271,731 + AMB_RS01215 0.85 +0.3
271,731 + AMB_RS01215 0.85 +0.8
271,732 - AMB_RS01215 0.85 +0.4
271,732 - AMB_RS01215 0.85 -0.0
271,732 - AMB_RS01215 0.85 -2.2
271,732 - AMB_RS01215 0.85 +0.1
271,773 + AMB_RS01215 0.87 -0.2
271,878 + AMB_RS01215 0.90 -0.1
271,878 + AMB_RS01215 0.90 -0.9
271,879 - AMB_RS01215 0.90 +0.2
272,232 + +0.4
272,232 + +0.0
272,232 + +0.2
272,233 - -1.4
272,233 - -0.8
272,326 - -0.7
272,350 + +0.3
272,443 - AMB_RS01220 0.13 +0.4
272,497 + AMB_RS01220 0.16 +0.1
272,497 + AMB_RS01220 0.16 -2.1
272,530 + AMB_RS01220 0.18 +0.1
272,530 + AMB_RS01220 0.18 -0.2
272,530 + AMB_RS01220 0.18 -2.1
272,530 + AMB_RS01220 0.18 +0.1
272,530 + AMB_RS01220 0.18 +1.3
272,531 - AMB_RS01220 0.18 +0.2
272,531 - AMB_RS01220 0.18 +0.3
272,531 - AMB_RS01220 0.18 -0.2
272,548 + AMB_RS01220 0.20 +0.2
272,800 + AMB_RS01220 0.36 -0.4
272,800 + AMB_RS01220 0.36 +0.9
272,800 + AMB_RS01220 0.36 -2.1
272,800 + AMB_RS01220 0.36 -0.6
272,950 + AMB_RS01220 0.46 -1.2
272,950 + AMB_RS01220 0.46 -0.7
272,951 - AMB_RS01220 0.46 -0.9
272,951 - AMB_RS01220 0.46 +0.1
272,951 - AMB_RS01220 0.46 +0.1
272,951 - AMB_RS01220 0.46 -3.8
272,955 + AMB_RS01220 0.46 +0.4
272,956 - AMB_RS01220 0.46 +0.0
272,956 - AMB_RS01220 0.46 -0.3
273,175 + AMB_RS01220 0.60 +0.6
273,175 + AMB_RS01220 0.60 +0.1
273,175 + AMB_RS01220 0.60 -0.4
273,175 + AMB_RS01220 0.60 +0.4
273,175 + AMB_RS01220 0.60 -0.9
273,176 - AMB_RS01220 0.60 -0.7
273,176 - AMB_RS01220 0.60 +0.2
273,176 - AMB_RS01220 0.60 -0.1
273,176 - AMB_RS01220 0.60 -1.4
273,176 - AMB_RS01220 0.60 -2.4
273,176 - AMB_RS01220 0.60 +0.0
273,176 - AMB_RS01220 0.60 +0.3
273,176 - AMB_RS01220 0.60 -2.5
273,176 - AMB_RS01220 0.60 +0.0

Or see this region's nucleotide sequence