Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01085

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01080 and AMB_RS01085 are separated by 118 nucleotidesAMB_RS01085 and AMB_RS01090 overlap by 4 nucleotides AMB_RS01080: AMB_RS01080 - exodeoxyribonuclease VII large subunit, at 239,367 to 241,433 _RS01080 AMB_RS01085: AMB_RS01085 - signal recognition particle-docking protein FtsY, at 241,552 to 242,550 _RS01085 AMB_RS01090: AMB_RS01090 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB, at 242,547 to 243,905 _RS01090 Position (kb) 241 242 243Strain fitness (log2 ratio) -2 -1 0 1at 241.219 kb on - strand, within AMB_RS01080at 241.231 kb on + strandat 241.431 kb on + strandat 241.431 kb on + strandat 241.431 kb on + strandat 241.431 kb on + strandat 241.432 kb on - strandat 241.432 kb on - strandat 241.432 kb on - strandat 241.442 kb on + strandat 241.443 kb on - strandat 241.550 kb on - strandat 241.553 kb on + strandat 241.553 kb on + strandat 241.554 kb on - strandat 241.554 kb on - strandat 242.651 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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241,219 - AMB_RS01080 0.90 -0.4
241,231 + -1.2
241,431 + -0.2
241,431 + -0.5
241,431 + -0.1
241,431 + +0.2
241,432 - +0.5
241,432 - +0.1
241,432 - +0.3
241,442 + -2.1
241,443 - +0.6
241,550 - +0.4
241,553 + +1.6
241,553 + -1.7
241,554 - +1.6
241,554 - -0.7
242,651 - +0.1

Or see this region's nucleotide sequence