Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00735

Experiment: 30_an_initial_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS00730 and AMB_RS00735 are separated by 79 nucleotidesAMB_RS00735 and AMB_RS00740 overlap by 19 nucleotidesAMB_RS00740 and AMB_RS00745 overlap by 4 nucleotides AMB_RS00730: AMB_RS00730 - nucleotide sugar dehydrogenase, at 166,520 to 167,791 _RS00730 AMB_RS00735: AMB_RS00735 - glycosyltransferase WbuB, at 167,871 to 169,130 _RS00735 AMB_RS00740: AMB_RS00740 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase, at 169,112 to 169,660 _RS00740 AMB_RS00745: AMB_RS00745 - MFS transporter, at 169,657 to 170,952 _RS00745 Position (kb) 167 168 169 170Strain fitness (log2 ratio) -2 -1 0 1at 169.878 kb on - strand, within AMB_RS00745at 169.878 kb on - strand, within AMB_RS00745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
remove
169,878 - AMB_RS00745 0.17 -2.1
169,878 - AMB_RS00745 0.17 -0.4

Or see this region's nucleotide sequence