Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00445

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00440 and AMB_RS00445 overlap by 1 nucleotidesAMB_RS00445 and AMB_RS00450 are separated by 53 nucleotides AMB_RS00440: AMB_RS00440 - hypothetical protein, at 96,266 to 98,272 _RS00440 AMB_RS00445: AMB_RS00445 - acylneuraminate cytidylyltransferase family protein, at 98,272 to 98,976 _RS00445 AMB_RS00450: AMB_RS00450 - radical SAM protein, at 99,030 to 100,166 _RS00450 Position (kb) 98 99Strain fitness (log2 ratio) -2 -1 0 1at 98.243 kb on + strandat 98.965 kb on - strandat 98.965 kb on - strandat 99.087 kb on + strandat 99.087 kb on + strandat 99.087 kb on + strandat 99.087 kb on + strandat 99.087 kb on + strandat 99.088 kb on - strandat 99.088 kb on - strandat 99.088 kb on - strandat 99.237 kb on + strand, within AMB_RS00450at 99.237 kb on + strand, within AMB_RS00450at 99.238 kb on - strand, within AMB_RS00450at 99.378 kb on + strand, within AMB_RS00450at 99.378 kb on + strand, within AMB_RS00450at 99.378 kb on + strand, within AMB_RS00450at 99.378 kb on + strand, within AMB_RS00450at 99.379 kb on - strand, within AMB_RS00450at 99.379 kb on - strand, within AMB_RS00450at 99.379 kb on - strand, within AMB_RS00450at 99.380 kb on + strand, within AMB_RS00450at 99.380 kb on + strand, within AMB_RS00450at 99.394 kb on - strand, within AMB_RS00450at 99.394 kb on - strand, within AMB_RS00450at 99.405 kb on + strand, within AMB_RS00450at 99.432 kb on + strand, within AMB_RS00450at 99.432 kb on + strand, within AMB_RS00450at 99.432 kb on + strand, within AMB_RS00450at 99.432 kb on + strand, within AMB_RS00450at 99.432 kb on + strand, within AMB_RS00450at 99.432 kb on + strand, within AMB_RS00450at 99.433 kb on - strand, within AMB_RS00450at 99.433 kb on - strand, within AMB_RS00450at 99.438 kb on + strand, within AMB_RS00450at 99.438 kb on + strand, within AMB_RS00450at 99.438 kb on + strand, within AMB_RS00450at 99.445 kb on + strand, within AMB_RS00450at 99.543 kb on + strand, within AMB_RS00450at 99.543 kb on + strand, within AMB_RS00450at 99.543 kb on + strand, within AMB_RS00450at 99.543 kb on + strand, within AMB_RS00450at 99.544 kb on - strand, within AMB_RS00450at 99.544 kb on - strand, within AMB_RS00450at 99.846 kb on + strand, within AMB_RS00450at 99.873 kb on + strand, within AMB_RS00450at 99.924 kb on + strand, within AMB_RS00450at 99.924 kb on + strand, within AMB_RS00450at 99.924 kb on + strand, within AMB_RS00450

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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98,243 + +0.6
98,965 - -0.0
98,965 - -0.2
99,087 + +0.2
99,087 + -0.2
99,087 + -2.3
99,087 + +0.5
99,087 + -0.9
99,088 - -1.8
99,088 - -1.4
99,088 - +0.1
99,237 + AMB_RS00450 0.18 -0.1
99,237 + AMB_RS00450 0.18 -0.3
99,238 - AMB_RS00450 0.18 +0.6
99,378 + AMB_RS00450 0.31 -0.2
99,378 + AMB_RS00450 0.31 -0.8
99,378 + AMB_RS00450 0.31 +0.2
99,378 + AMB_RS00450 0.31 +0.6
99,379 - AMB_RS00450 0.31 -0.8
99,379 - AMB_RS00450 0.31 -0.4
99,379 - AMB_RS00450 0.31 +0.6
99,380 + AMB_RS00450 0.31 -1.5
99,380 + AMB_RS00450 0.31 -0.4
99,394 - AMB_RS00450 0.32 +1.6
99,394 - AMB_RS00450 0.32 -0.9
99,405 + AMB_RS00450 0.33 -1.7
99,432 + AMB_RS00450 0.35 +0.2
99,432 + AMB_RS00450 0.35 +0.3
99,432 + AMB_RS00450 0.35 +0.2
99,432 + AMB_RS00450 0.35 +0.1
99,432 + AMB_RS00450 0.35 -0.6
99,432 + AMB_RS00450 0.35 -0.1
99,433 - AMB_RS00450 0.35 +1.6
99,433 - AMB_RS00450 0.35 -2.4
99,438 + AMB_RS00450 0.36 -0.8
99,438 + AMB_RS00450 0.36 -0.0
99,438 + AMB_RS00450 0.36 +0.6
99,445 + AMB_RS00450 0.36 +0.6
99,543 + AMB_RS00450 0.45 +0.4
99,543 + AMB_RS00450 0.45 -1.4
99,543 + AMB_RS00450 0.45 -0.7
99,543 + AMB_RS00450 0.45 -0.2
99,544 - AMB_RS00450 0.45 -0.7
99,544 - AMB_RS00450 0.45 -0.6
99,846 + AMB_RS00450 0.72 +0.2
99,873 + AMB_RS00450 0.74 +1.5
99,924 + AMB_RS00450 0.79 -0.2
99,924 + AMB_RS00450 0.79 +0.6
99,924 + AMB_RS00450 0.79 -0.9

Or see this region's nucleotide sequence