Experiment: 30_an_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00025 and AMB_RS00030 are separated by 99 nucleotides AMB_RS00030 and AMB_RS00035 are separated by 0 nucleotides AMB_RS00035 and AMB_RS00040 are separated by 190 nucleotides AMB_RS00040 and AMB_RS00045 are separated by 189 nucleotides
AMB_RS00025: AMB_RS00025 - chromosome partitioning protein ParB, at 4,718 to 5,662
_RS00025
AMB_RS00030: AMB_RS00030 - hypothetical protein, at 5,762 to 6,118
_RS00030
AMB_RS00035: AMB_RS00035 - hypothetical protein, at 6,119 to 6,610
_RS00035
AMB_RS00040: AMB_RS00040 - tRNA-Gly, at 6,801 to 6,875
_RS00040
AMB_RS00045: AMB_RS00045 - thioredoxin, at 7,065 to 7,997
_RS00045
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1 at 5.623 kb on + strand at 5.682 kb on + strand at 5.705 kb on + strand at 5.706 kb on - strand at 6.066 kb on - strand, within AMB_RS00030 at 6.152 kb on + strand at 6.152 kb on + strand at 6.228 kb on - strand, within AMB_RS00035 at 6.257 kb on + strand, within AMB_RS00035 at 6.485 kb on + strand, within AMB_RS00035 at 6.486 kb on - strand, within AMB_RS00035 at 6.486 kb on - strand, within AMB_RS00035 at 6.488 kb on + strand, within AMB_RS00035 at 6.488 kb on + strand, within AMB_RS00035 at 6.489 kb on - strand, within AMB_RS00035 at 6.489 kb on - strand, within AMB_RS00035 at 6.489 kb on - strand, within AMB_RS00035 at 6.629 kb on - strand at 6.776 kb on - strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_1 remove 5,623 + -0.1 5,682 + -0.4 5,705 + -1.4 5,706 - +0.1 6,066 - AMB_RS00030 0.85 -0.4 6,152 + -0.0 6,152 + -0.4 6,228 - AMB_RS00035 0.22 -0.9 6,257 + AMB_RS00035 0.28 -0.2 6,485 + AMB_RS00035 0.74 -1.3 6,486 - AMB_RS00035 0.75 -0.1 6,486 - AMB_RS00035 0.75 -0.2 6,488 + AMB_RS00035 0.75 -0.2 6,488 + AMB_RS00035 0.75 +0.0 6,489 - AMB_RS00035 0.75 +0.1 6,489 - AMB_RS00035 0.75 +1.6 6,489 - AMB_RS00035 0.75 -0.3 6,629 - +0.1 6,776 - +0.2 7,024 + -1.8 7,024 + +0.6 7,024 + -0.2 7,024 + +1.0 7,025 - -0.5 7,025 - -0.5 7,025 - -0.7 7,025 - -0.7 7,025 - +0.1 7,025 - +0.6 7,036 - +0.6
Or see this region's nucleotide sequence