Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29300 and ABID97_RS29305 overlap by 4 nucleotides ABID97_RS29305 and ABID97_RS29310 overlap by 4 nucleotides ABID97_RS29310 and ABID97_RS29315 overlap by 4 nucleotides
ABID97_RS29300: ABID97_RS29300 - SMP-30/gluconolactonase/LRE family protein, at 784,106 to 785,035
_RS29300
ABID97_RS29305: ABID97_RS29305 - YncE family protein, at 785,032 to 785,961
_RS29305
ABID97_RS29310: ABID97_RS29310 - sugar ABC transporter ATP-binding protein, at 785,958 to 787,514
_RS29310
ABID97_RS29315: ABID97_RS29315 - ABC transporter permease, at 787,511 to 788,608
_RS29315
Position (kb) 785
786
787
788 Strain fitness (log2 ratio) -1
0
1 at 785.011 kb on + strand at 785.084 kb on - strand at 785.086 kb on + strand at 785.176 kb on + strand, within ABID97_RS29305 at 785.177 kb on - strand, within ABID97_RS29305 at 785.599 kb on + strand, within ABID97_RS29305 at 785.699 kb on - strand, within ABID97_RS29305 at 786.556 kb on - strand, within ABID97_RS29310 at 786.556 kb on - strand, within ABID97_RS29310 at 786.556 kb on - strand, within ABID97_RS29310 at 786.556 kb on - strand, within ABID97_RS29310 at 786.556 kb on - strand, within ABID97_RS29310 at 786.759 kb on + strand, within ABID97_RS29310 at 787.272 kb on + strand, within ABID97_RS29310 at 787.272 kb on + strand, within ABID97_RS29310 at 787.487 kb on + strand at 787.487 kb on + strand at 787.488 kb on - strand at 787.974 kb on - strand, within ABID97_RS29315 at 788.085 kb on - strand, within ABID97_RS29315 at 788.150 kb on + strand, within ABID97_RS29315 at 788.151 kb on - strand, within ABID97_RS29315
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 785,011 + +0.5 785,084 - -0.0 785,086 + +1.1 785,176 + ABID97_RS29305 0.15 -0.3 785,177 - ABID97_RS29305 0.16 -0.2 785,599 + ABID97_RS29305 0.61 -0.0 785,699 - ABID97_RS29305 0.72 -0.2 786,556 - ABID97_RS29310 0.38 -0.3 786,556 - ABID97_RS29310 0.38 +0.1 786,556 - ABID97_RS29310 0.38 +0.3 786,556 - ABID97_RS29310 0.38 -0.5 786,556 - ABID97_RS29310 0.38 -1.4 786,759 + ABID97_RS29310 0.51 -0.1 787,272 + ABID97_RS29310 0.84 +0.6 787,272 + ABID97_RS29310 0.84 -0.4 787,487 + -0.4 787,487 + +0.1 787,488 - -0.2 787,974 - ABID97_RS29315 0.42 -0.3 788,085 - ABID97_RS29315 0.52 -0.2 788,150 + ABID97_RS29315 0.58 -0.2 788,151 - ABID97_RS29315 0.58 -1.3
Or see this region's nucleotide sequence