Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28380

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS28375 and ABID97_RS28380 overlap by 4 nucleotidesABID97_RS28380 and ABID97_RS28385 overlap by 20 nucleotidesABID97_RS28385 and ABID97_RS28390 overlap by 7 nucleotides ABID97_RS28375: ABID97_RS28375 - branched-chain amino acid ABC transporter permease, at 595,113 to 596,123 _RS28375 ABID97_RS28380: ABID97_RS28380 - ABC transporter ATP-binding protein, at 596,120 to 596,884 _RS28380 ABID97_RS28385: ABID97_RS28385 - ABC transporter ATP-binding protein, at 596,865 to 597,587 _RS28385 ABID97_RS28390: ABID97_RS28390 - MFS transporter, at 597,581 to 598,891 _RS28390 Position (kb) 596 597Strain fitness (log2 ratio) -1 0 1at 596.088 kb on + strandat 596.300 kb on - strand, within ABID97_RS28380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
596,088 + -0.3
596,300 - ABID97_RS28380 0.24 -1.7

Or see this region's nucleotide sequence