Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27160

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27155 and ABID97_RS27160 are separated by 153 nucleotidesABID97_RS27160 and ABID97_RS27165 are separated by 215 nucleotidesABID97_RS27165 and ABID97_RS27170 are separated by 17 nucleotides ABID97_RS27155: ABID97_RS27155 - TauD/TfdA family dioxygenase, at 352,710 to 353,669 _RS27155 ABID97_RS27160: ABID97_RS27160 - hypothetical protein, at 353,823 to 354,557 _RS27160 ABID97_RS27165: ABID97_RS27165 - DUF4279 domain-containing protein, at 354,773 to 355,381 _RS27165 ABID97_RS27170: ABID97_RS27170 - hypothetical protein, at 355,399 to 355,833 _RS27170 Position (kb) 353 354 355Strain fitness (log2 ratio) -1 0 1at 353.509 kb on + strand, within ABID97_RS27155at 353.936 kb on - strand, within ABID97_RS27160at 353.936 kb on - strand, within ABID97_RS27160at 354.074 kb on - strand, within ABID97_RS27160at 354.562 kb on - strandat 354.735 kb on - strandat 354.935 kb on - strand, within ABID97_RS27165at 355.089 kb on + strand, within ABID97_RS27165at 355.481 kb on + strand, within ABID97_RS27170

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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353,509 + ABID97_RS27155 0.83 +1.6
353,936 - ABID97_RS27160 0.15 -0.8
353,936 - ABID97_RS27160 0.15 -1.1
354,074 - ABID97_RS27160 0.34 -0.9
354,562 - -0.5
354,735 - +0.0
354,935 - ABID97_RS27165 0.27 -0.3
355,089 + ABID97_RS27165 0.52 -0.8
355,481 + ABID97_RS27170 0.19 +0.1

Or see this region's nucleotide sequence