Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26725

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26720 and ABID97_RS26725 are separated by 129 nucleotidesABID97_RS26725 and ABID97_RS26730 are separated by 24 nucleotidesABID97_RS26730 and ABID97_RS26735 are separated by 11 nucleotides ABID97_RS26720: ABID97_RS26720 - LysR substrate-binding domain-containing protein, at 267,686 to 268,630 _RS26720 ABID97_RS26725: ABID97_RS26725 - amidase, at 268,760 to 270,217 _RS26725 ABID97_RS26730: ABID97_RS26730 - TetR family transcriptional regulator C-terminal domain-containing protein, at 270,242 to 270,886 _RS26730 ABID97_RS26735: ABID97_RS26735 - enoyl-CoA hydratase, at 270,898 to 271,779 _RS26735 Position (kb) 268 269 270 271Strain fitness (log2 ratio) -1 0 1at 268.501 kb on - strandat 268.728 kb on - strandat 269.796 kb on - strand, within ABID97_RS26725at 269.945 kb on + strand, within ABID97_RS26725at 269.946 kb on - strand, within ABID97_RS26725at 269.946 kb on - strand, within ABID97_RS26725at 270.703 kb on - strand, within ABID97_RS26730at 270.708 kb on + strand, within ABID97_RS26730at 270.708 kb on + strand, within ABID97_RS26730

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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268,501 - +1.0
268,728 - +0.6
269,796 - ABID97_RS26725 0.71 -0.7
269,945 + ABID97_RS26725 0.81 -0.0
269,946 - ABID97_RS26725 0.81 -0.2
269,946 - ABID97_RS26725 0.81 -1.1
270,703 - ABID97_RS26730 0.71 -0.7
270,708 + ABID97_RS26730 0.72 -0.2
270,708 + ABID97_RS26730 0.72 +0.5

Or see this region's nucleotide sequence