Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22790 and ABID97_RS22795 are separated by 10 nucleotides ABID97_RS22795 and ABID97_RS22800 overlap by 7 nucleotides ABID97_RS22800 and ABID97_RS22805 are separated by 3 nucleotides
ABID97_RS22790: ABID97_RS22790 - 1,2-phenylacetyl-CoA epoxidase subunit PaaB, at 4,719,154 to 4,719,450
_RS22790
ABID97_RS22795: ABID97_RS22795 - 1,2-phenylacetyl-CoA epoxidase subunit PaaC, at 4,719,461 to 4,720,240
_RS22795
ABID97_RS22800: ABID97_RS22800 - 1,2-phenylacetyl-CoA epoxidase subunit PaaD, at 4,720,234 to 4,720,767
_RS22800
ABID97_RS22805: ABID97_RS22805 - 1,2-phenylacetyl-CoA epoxidase subunit PaaE, at 4,720,771 to 4,721,874
_RS22805
Position (kb) 4720
4721 Strain fitness (log2 ratio) -1
0
1
2 at 4719.401 kb on - strand, within ABID97_RS22790 at 4720.184 kb on + strand at 4720.184 kb on + strand at 4720.185 kb on - strand at 4720.543 kb on + strand, within ABID97_RS22800 at 4720.781 kb on + strand at 4720.782 kb on - strand at 4720.894 kb on + strand, within ABID97_RS22805 at 4720.895 kb on - strand, within ABID97_RS22805 at 4721.275 kb on + strand, within ABID97_RS22805 at 4721.276 kb on - strand, within ABID97_RS22805 at 4721.413 kb on + strand, within ABID97_RS22805 at 4721.414 kb on - strand, within ABID97_RS22805
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 4,719,401 - ABID97_RS22790 0.83 -0.0 4,720,184 + -0.8 4,720,184 + +0.1 4,720,185 - -0.4 4,720,543 + ABID97_RS22800 0.58 -1.5 4,720,781 + -0.3 4,720,782 - +1.9 4,720,894 + ABID97_RS22805 0.11 -1.6 4,720,895 - ABID97_RS22805 0.11 -0.3 4,721,275 + ABID97_RS22805 0.46 -0.7 4,721,276 - ABID97_RS22805 0.46 -0.2 4,721,413 + ABID97_RS22805 0.58 -0.3 4,721,414 - ABID97_RS22805 0.58 +0.6
Or see this region's nucleotide sequence