Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17745 and ABID97_RS17750 are separated by 2 nucleotides ABID97_RS17750 and ABID97_RS17755 are separated by 54 nucleotides ABID97_RS17755 and ABID97_RS17760 are separated by 55 nucleotides ABID97_RS17760 and ABID97_RS17765 are separated by 252 nucleotides
ABID97_RS17745: ABID97_RS17745 - sensor histidine kinase, at 3,668,664 to 3,670,085
_RS17745
ABID97_RS17750: ABID97_RS17750 - RNA-binding S4 domain-containing protein, at 3,670,088 to 3,670,522
_RS17750
ABID97_RS17755: ABID97_RS17755 - PPK2 family polyphosphate kinase, at 3,670,577 to 3,671,386
_RS17755
ABID97_RS17760: ABID97_RS17760 - hypothetical protein, at 3,671,442 to 3,672,110
_RS17760
ABID97_RS17765: ABID97_RS17765 - recombinase family protein, at 3,672,363 to 3,672,956
_RS17765
Position (kb)
3670
3671
3672 Strain fitness (log2 ratio)
-1
0
1 at 3669.955 kb on + strand at 3669.956 kb on - strand at 3670.109 kb on - strand at 3670.179 kb on + strand, within ABID97_RS17750 at 3670.325 kb on + strand, within ABID97_RS17750 at 3670.889 kb on + strand, within ABID97_RS17755 at 3670.956 kb on - strand, within ABID97_RS17755 at 3671.255 kb on + strand, within ABID97_RS17755 at 3671.255 kb on + strand, within ABID97_RS17755 at 3671.255 kb on + strand, within ABID97_RS17755 at 3671.255 kb on + strand, within ABID97_RS17755 at 3671.256 kb on - strand, within ABID97_RS17755 at 3671.537 kb on - strand, within ABID97_RS17760 at 3671.623 kb on + strand, within ABID97_RS17760 at 3671.623 kb on + strand, within ABID97_RS17760 at 3671.623 kb on + strand, within ABID97_RS17760 at 3671.624 kb on - strand, within ABID97_RS17760 at 3671.624 kb on - strand, within ABID97_RS17760 at 3671.624 kb on - strand, within ABID97_RS17760 at 3671.624 kb on - strand, within ABID97_RS17760 at 3671.624 kb on - strand, within ABID97_RS17760 at 3671.683 kb on + strand, within ABID97_RS17760 at 3672.007 kb on + strand, within ABID97_RS17760 at 3672.007 kb on + strand, within ABID97_RS17760 at 3672.007 kb on + strand, within ABID97_RS17760 at 3672.007 kb on + strand, within ABID97_RS17760 at 3672.008 kb on - strand, within ABID97_RS17760 at 3672.008 kb on - strand, within ABID97_RS17760 at 3672.008 kb on - strand, within ABID97_RS17760 at 3672.008 kb on - strand, within ABID97_RS17760 at 3672.137 kb on + strand at 3672.158 kb on - strand at 3672.234 kb on - strand at 3672.317 kb on + strand at 3672.364 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 3,669,955 + +0.5 3,669,956 - +0.7 3,670,109 - -0.5 3,670,179 + ABID97_RS17750 0.21 -0.4 3,670,325 + ABID97_RS17750 0.54 -0.1 3,670,889 + ABID97_RS17755 0.39 -0.9 3,670,956 - ABID97_RS17755 0.47 -0.6 3,671,255 + ABID97_RS17755 0.84 +0.1 3,671,255 + ABID97_RS17755 0.84 -0.1 3,671,255 + ABID97_RS17755 0.84 -0.4 3,671,255 + ABID97_RS17755 0.84 -0.4 3,671,256 - ABID97_RS17755 0.84 -0.7 3,671,537 - ABID97_RS17760 0.14 -0.0 3,671,623 + ABID97_RS17760 0.27 +0.4 3,671,623 + ABID97_RS17760 0.27 +0.2 3,671,623 + ABID97_RS17760 0.27 -0.3 3,671,624 - ABID97_RS17760 0.27 -0.5 3,671,624 - ABID97_RS17760 0.27 -0.2 3,671,624 - ABID97_RS17760 0.27 +0.6 3,671,624 - ABID97_RS17760 0.27 -0.0 3,671,624 - ABID97_RS17760 0.27 +0.3 3,671,683 + ABID97_RS17760 0.36 -0.1 3,672,007 + ABID97_RS17760 0.84 -1.1 3,672,007 + ABID97_RS17760 0.84 +0.7 3,672,007 + ABID97_RS17760 0.84 +0.1 3,672,007 + ABID97_RS17760 0.84 +0.0 3,672,008 - ABID97_RS17760 0.85 -1.2 3,672,008 - ABID97_RS17760 0.85 +0.4 3,672,008 - ABID97_RS17760 0.85 -0.1 3,672,008 - ABID97_RS17760 0.85 +1.2 3,672,137 + -1.7 3,672,158 - -1.5 3,672,234 - -0.1 3,672,317 + -0.4 3,672,364 + -0.3
Or see this region's nucleotide sequence