Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16405

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16400 and ABID97_RS16405 are separated by 14 nucleotidesABID97_RS16405 and ABID97_RS16410 are separated by 11 nucleotidesABID97_RS16410 and ABID97_RS16415 are separated by 76 nucleotides ABID97_RS16400: ABID97_RS16400 - glutamine-hydrolyzing GMP synthase, at 3,393,542 to 3,395,191 _RS16400 ABID97_RS16405: ABID97_RS16405 - type II toxin-antitoxin system VapC family toxin, at 3,395,206 to 3,395,625 _RS16405 ABID97_RS16410: ABID97_RS16410 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 3,395,637 to 3,395,885 _RS16410 ABID97_RS16415: ABID97_RS16415 - IMP dehydrogenase, at 3,395,962 to 3,397,431 _RS16415 Position (kb) 3395 3396Strain fitness (log2 ratio) -1 0 1at 3395.315 kb on + strand, within ABID97_RS16405at 3395.327 kb on + strand, within ABID97_RS16405at 3395.559 kb on - strand, within ABID97_RS16405at 3395.852 kb on + strand, within ABID97_RS16410at 3395.853 kb on - strand, within ABID97_RS16410at 3395.853 kb on - strand, within ABID97_RS16410at 3395.853 kb on - strand, within ABID97_RS16410at 3395.964 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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3,395,315 + ABID97_RS16405 0.26 -0.6
3,395,327 + ABID97_RS16405 0.29 -1.1
3,395,559 - ABID97_RS16405 0.84 -0.8
3,395,852 + ABID97_RS16410 0.86 -0.1
3,395,853 - ABID97_RS16410 0.87 -0.5
3,395,853 - ABID97_RS16410 0.87 -1.4
3,395,853 - ABID97_RS16410 0.87 -0.2
3,395,964 - -1.0

Or see this region's nucleotide sequence