Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16400 and ABID97_RS16405 are separated by 14 nucleotides ABID97_RS16405 and ABID97_RS16410 are separated by 11 nucleotides ABID97_RS16410 and ABID97_RS16415 are separated by 76 nucleotides
ABID97_RS16400: ABID97_RS16400 - glutamine-hydrolyzing GMP synthase, at 3,393,542 to 3,395,191
_RS16400
ABID97_RS16405: ABID97_RS16405 - type II toxin-antitoxin system VapC family toxin, at 3,395,206 to 3,395,625
_RS16405
ABID97_RS16410: ABID97_RS16410 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 3,395,637 to 3,395,885
_RS16410
ABID97_RS16415: ABID97_RS16415 - IMP dehydrogenase, at 3,395,962 to 3,397,431
_RS16415
Position (kb)
3395
3396 Strain fitness (log2 ratio)
-1
0
1 at 3395.315 kb on + strand, within ABID97_RS16405 at 3395.327 kb on + strand, within ABID97_RS16405 at 3395.559 kb on - strand, within ABID97_RS16405 at 3395.852 kb on + strand, within ABID97_RS16410 at 3395.853 kb on - strand, within ABID97_RS16410 at 3395.853 kb on - strand, within ABID97_RS16410 at 3395.853 kb on - strand, within ABID97_RS16410 at 3395.964 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 3,395,315 + ABID97_RS16405 0.26 -0.6 3,395,327 + ABID97_RS16405 0.29 -1.1 3,395,559 - ABID97_RS16405 0.84 -0.8 3,395,852 + ABID97_RS16410 0.86 -0.1 3,395,853 - ABID97_RS16410 0.87 -0.5 3,395,853 - ABID97_RS16410 0.87 -1.4 3,395,853 - ABID97_RS16410 0.87 -0.2 3,395,964 - -1.0
Or see this region's nucleotide sequence