Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15820 and ABID97_RS15825 are separated by 97 nucleotides ABID97_RS15825 and ABID97_RS15830 overlap by 52 nucleotides ABID97_RS15830 and ABID97_RS15835 are separated by 217 nucleotides
ABID97_RS15820: ABID97_RS15820 - MFS transporter, at 3,277,416 to 3,278,606
_RS15820
ABID97_RS15825: ABID97_RS15825 - LysR substrate-binding domain-containing protein, at 3,278,704 to 3,279,666
_RS15825
ABID97_RS15830: ABID97_RS15830 - fumarylacetoacetate hydrolase family protein, at 3,279,615 to 3,280,385
_RS15830
ABID97_RS15835: ABID97_RS15835 - tripartite tricarboxylate transporter substrate binding protein, at 3,280,603 to 3,281,580
_RS15835
Position (kb)
3278
3279
3280 Strain fitness (log2 ratio)
-1
0
1 at 3277.942 kb on + strand, within ABID97_RS15820 at 3277.942 kb on + strand, within ABID97_RS15820 at 3278.335 kb on + strand, within ABID97_RS15820 at 3278.336 kb on - strand, within ABID97_RS15820 at 3278.336 kb on - strand, within ABID97_RS15820 at 3278.914 kb on + strand, within ABID97_RS15825 at 3278.914 kb on + strand, within ABID97_RS15825 at 3279.440 kb on - strand, within ABID97_RS15825 at 3279.529 kb on + strand, within ABID97_RS15825 at 3279.617 kb on - strand at 3279.878 kb on - strand, within ABID97_RS15830 at 3280.273 kb on + strand, within ABID97_RS15830 at 3280.274 kb on - strand, within ABID97_RS15830 at 3280.591 kb on + strand at 3280.591 kb on + strand at 3280.591 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 3,277,942 + ABID97_RS15820 0.44 -0.4 3,277,942 + ABID97_RS15820 0.44 +0.1 3,278,335 + ABID97_RS15820 0.77 -0.1 3,278,336 - ABID97_RS15820 0.77 +0.2 3,278,336 - ABID97_RS15820 0.77 -0.3 3,278,914 + ABID97_RS15825 0.22 -0.8 3,278,914 + ABID97_RS15825 0.22 -0.1 3,279,440 - ABID97_RS15825 0.76 -0.2 3,279,529 + ABID97_RS15825 0.86 -0.8 3,279,617 - -0.0 3,279,878 - ABID97_RS15830 0.34 -0.8 3,280,273 + ABID97_RS15830 0.85 +0.4 3,280,274 - ABID97_RS15830 0.85 +0.7 3,280,591 + -0.5 3,280,591 + +0.1 3,280,591 + +0.8
Or see this region's nucleotide sequence