Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15825

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15820 and ABID97_RS15825 are separated by 97 nucleotidesABID97_RS15825 and ABID97_RS15830 overlap by 52 nucleotidesABID97_RS15830 and ABID97_RS15835 are separated by 217 nucleotides ABID97_RS15820: ABID97_RS15820 - MFS transporter, at 3,277,416 to 3,278,606 _RS15820 ABID97_RS15825: ABID97_RS15825 - LysR substrate-binding domain-containing protein, at 3,278,704 to 3,279,666 _RS15825 ABID97_RS15830: ABID97_RS15830 - fumarylacetoacetate hydrolase family protein, at 3,279,615 to 3,280,385 _RS15830 ABID97_RS15835: ABID97_RS15835 - tripartite tricarboxylate transporter substrate binding protein, at 3,280,603 to 3,281,580 _RS15835 Position (kb) 3278 3279 3280Strain fitness (log2 ratio) -1 0 1at 3277.942 kb on + strand, within ABID97_RS15820at 3277.942 kb on + strand, within ABID97_RS15820at 3278.335 kb on + strand, within ABID97_RS15820at 3278.336 kb on - strand, within ABID97_RS15820at 3278.336 kb on - strand, within ABID97_RS15820at 3278.914 kb on + strand, within ABID97_RS15825at 3278.914 kb on + strand, within ABID97_RS15825at 3279.440 kb on - strand, within ABID97_RS15825at 3279.529 kb on + strand, within ABID97_RS15825at 3279.617 kb on - strandat 3279.878 kb on - strand, within ABID97_RS15830at 3280.273 kb on + strand, within ABID97_RS15830at 3280.274 kb on - strand, within ABID97_RS15830at 3280.591 kb on + strandat 3280.591 kb on + strandat 3280.591 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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3,277,942 + ABID97_RS15820 0.44 -0.4
3,277,942 + ABID97_RS15820 0.44 +0.1
3,278,335 + ABID97_RS15820 0.77 -0.1
3,278,336 - ABID97_RS15820 0.77 +0.2
3,278,336 - ABID97_RS15820 0.77 -0.3
3,278,914 + ABID97_RS15825 0.22 -0.8
3,278,914 + ABID97_RS15825 0.22 -0.1
3,279,440 - ABID97_RS15825 0.76 -0.2
3,279,529 + ABID97_RS15825 0.86 -0.8
3,279,617 - -0.0
3,279,878 - ABID97_RS15830 0.34 -0.8
3,280,273 + ABID97_RS15830 0.85 +0.4
3,280,274 - ABID97_RS15830 0.85 +0.7
3,280,591 + -0.5
3,280,591 + +0.1
3,280,591 + +0.8

Or see this region's nucleotide sequence