Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13600

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13595 and ABID97_RS13600 are separated by 1 nucleotidesABID97_RS13600 and ABID97_RS13605 are separated by 25 nucleotides ABID97_RS13595: ABID97_RS13595 - hydrogenase maturation protein, at 2,833,726 to 2,835,486 _RS13595 ABID97_RS13600: ABID97_RS13600 - hypothetical protein, at 2,835,488 to 2,835,967 _RS13600 ABID97_RS13605: ABID97_RS13605 - hydrogenase expression/formation protein HypE, at 2,835,993 to 2,837,036 _RS13605 Position (kb) 2835 2836Strain fitness (log2 ratio) -1 0 1at 2834.580 kb on - strand, within ABID97_RS13595at 2835.083 kb on + strand, within ABID97_RS13595at 2835.084 kb on - strand, within ABID97_RS13595at 2835.579 kb on + strand, within ABID97_RS13600at 2836.207 kb on + strand, within ABID97_RS13605at 2836.470 kb on + strand, within ABID97_RS13605at 2836.471 kb on - strand, within ABID97_RS13605at 2836.735 kb on + strand, within ABID97_RS13605at 2836.736 kb on - strand, within ABID97_RS13605at 2836.909 kb on + strand, within ABID97_RS13605at 2836.909 kb on + strand, within ABID97_RS13605at 2836.909 kb on + strand, within ABID97_RS13605

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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2,834,580 - ABID97_RS13595 0.48 -0.7
2,835,083 + ABID97_RS13595 0.77 -1.1
2,835,084 - ABID97_RS13595 0.77 +0.3
2,835,579 + ABID97_RS13600 0.19 -1.0
2,836,207 + ABID97_RS13605 0.20 -1.2
2,836,470 + ABID97_RS13605 0.46 -1.1
2,836,471 - ABID97_RS13605 0.46 -0.1
2,836,735 + ABID97_RS13605 0.71 -0.7
2,836,736 - ABID97_RS13605 0.71 +0.1
2,836,909 + ABID97_RS13605 0.88 -0.5
2,836,909 + ABID97_RS13605 0.88 +0.7
2,836,909 + ABID97_RS13605 0.88 -0.3

Or see this region's nucleotide sequence