Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13345

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13340 and ABID97_RS13345 overlap by 8 nucleotidesABID97_RS13345 and ABID97_RS13350 are separated by 110 nucleotides ABID97_RS13340: ABID97_RS13340 - molybdopterin-dependent oxidoreductase, at 2,777,627 to 2,778,679 _RS13340 ABID97_RS13345: ABID97_RS13345 - carbon-nitrogen hydrolase family protein, at 2,778,672 to 2,779,712 _RS13345 ABID97_RS13350: ABID97_RS13350 - CmpA/NrtA family ABC transporter substrate-binding protein, at 2,779,823 to 2,781,292 _RS13350 Position (kb) 2778 2779 2780Strain fitness (log2 ratio) -1 0 1 2at 2778.013 kb on - strand, within ABID97_RS13340at 2778.808 kb on + strand, within ABID97_RS13345at 2779.480 kb on + strand, within ABID97_RS13345at 2779.481 kb on - strand, within ABID97_RS13345at 2779.481 kb on - strand, within ABID97_RS13345at 2779.481 kb on - strand, within ABID97_RS13345at 2779.481 kb on - strand, within ABID97_RS13345at 2779.523 kb on - strand, within ABID97_RS13345at 2779.567 kb on + strand, within ABID97_RS13345at 2779.568 kb on - strand, within ABID97_RS13345at 2779.568 kb on - strand, within ABID97_RS13345at 2780.645 kb on + strand, within ABID97_RS13350at 2780.645 kb on + strand, within ABID97_RS13350at 2780.645 kb on + strand, within ABID97_RS13350at 2780.669 kb on + strand, within ABID97_RS13350

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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2,778,013 - ABID97_RS13340 0.37 -0.1
2,778,808 + ABID97_RS13345 0.13 +2.3
2,779,480 + ABID97_RS13345 0.78 +1.6
2,779,481 - ABID97_RS13345 0.78 +0.2
2,779,481 - ABID97_RS13345 0.78 -0.8
2,779,481 - ABID97_RS13345 0.78 +1.2
2,779,481 - ABID97_RS13345 0.78 +2.0
2,779,523 - ABID97_RS13345 0.82 +0.7
2,779,567 + ABID97_RS13345 0.86 +1.4
2,779,568 - ABID97_RS13345 0.86 +0.2
2,779,568 - ABID97_RS13345 0.86 -0.6
2,780,645 + ABID97_RS13350 0.56 -0.0
2,780,645 + ABID97_RS13350 0.56 +0.0
2,780,645 + ABID97_RS13350 0.56 +0.1
2,780,669 + ABID97_RS13350 0.58 -0.8

Or see this region's nucleotide sequence