Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13340 and ABID97_RS13345 overlap by 8 nucleotides ABID97_RS13345 and ABID97_RS13350 are separated by 110 nucleotides
ABID97_RS13340: ABID97_RS13340 - molybdopterin-dependent oxidoreductase, at 2,777,627 to 2,778,679
_RS13340
ABID97_RS13345: ABID97_RS13345 - carbon-nitrogen hydrolase family protein, at 2,778,672 to 2,779,712
_RS13345
ABID97_RS13350: ABID97_RS13350 - CmpA/NrtA family ABC transporter substrate-binding protein, at 2,779,823 to 2,781,292
_RS13350
Position (kb)
2778
2779
2780 Strain fitness (log2 ratio)
-1
0
1
2 at 2778.013 kb on - strand, within ABID97_RS13340 at 2778.808 kb on + strand, within ABID97_RS13345 at 2779.480 kb on + strand, within ABID97_RS13345 at 2779.481 kb on - strand, within ABID97_RS13345 at 2779.481 kb on - strand, within ABID97_RS13345 at 2779.481 kb on - strand, within ABID97_RS13345 at 2779.481 kb on - strand, within ABID97_RS13345 at 2779.523 kb on - strand, within ABID97_RS13345 at 2779.567 kb on + strand, within ABID97_RS13345 at 2779.568 kb on - strand, within ABID97_RS13345 at 2779.568 kb on - strand, within ABID97_RS13345 at 2780.645 kb on + strand, within ABID97_RS13350 at 2780.645 kb on + strand, within ABID97_RS13350 at 2780.645 kb on + strand, within ABID97_RS13350 at 2780.669 kb on + strand, within ABID97_RS13350
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 2,778,013 - ABID97_RS13340 0.37 -0.1 2,778,808 + ABID97_RS13345 0.13 +2.3 2,779,480 + ABID97_RS13345 0.78 +1.6 2,779,481 - ABID97_RS13345 0.78 +0.2 2,779,481 - ABID97_RS13345 0.78 -0.8 2,779,481 - ABID97_RS13345 0.78 +1.2 2,779,481 - ABID97_RS13345 0.78 +2.0 2,779,523 - ABID97_RS13345 0.82 +0.7 2,779,567 + ABID97_RS13345 0.86 +1.4 2,779,568 - ABID97_RS13345 0.86 +0.2 2,779,568 - ABID97_RS13345 0.86 -0.6 2,780,645 + ABID97_RS13350 0.56 -0.0 2,780,645 + ABID97_RS13350 0.56 +0.0 2,780,645 + ABID97_RS13350 0.56 +0.1 2,780,669 + ABID97_RS13350 0.58 -0.8
Or see this region's nucleotide sequence