Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13180

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13170 and ABID97_RS13175 are separated by 1 nucleotidesABID97_RS13175 and ABID97_RS13180 overlap by 4 nucleotidesABID97_RS13180 and ABID97_RS13185 are separated by 5 nucleotidesABID97_RS13185 and ABID97_RS13190 are separated by 36 nucleotides ABID97_RS13170: ABID97_RS13170 - ABC transporter ATP-binding protein, at 2,743,960 to 2,744,673 _RS13170 ABID97_RS13175: ABID97_RS13175 - ABC transporter ATP-binding protein, at 2,744,675 to 2,745,415 _RS13175 ABID97_RS13180: ABID97_RS13180 - branched-chain amino acid ABC transporter permease, at 2,745,412 to 2,746,401 _RS13180 ABID97_RS13185: ABID97_RS13185 - branched-chain amino acid ABC transporter permease, at 2,746,407 to 2,747,264 _RS13185 ABID97_RS13190: ABID97_RS13190 - ABC transporter substrate-binding protein, at 2,747,301 to 2,748,479 _RS13190 Position (kb) 2745 2746 2747Strain fitness (log2 ratio) -1 0 1at 2744.423 kb on + strand, within ABID97_RS13170at 2744.423 kb on + strand, within ABID97_RS13170at 2744.789 kb on + strand, within ABID97_RS13175at 2744.790 kb on - strand, within ABID97_RS13175at 2744.790 kb on - strand, within ABID97_RS13175at 2744.790 kb on - strand, within ABID97_RS13175at 2744.819 kb on + strand, within ABID97_RS13175at 2744.968 kb on - strand, within ABID97_RS13175at 2745.234 kb on - strand, within ABID97_RS13175at 2745.722 kb on + strand, within ABID97_RS13180at 2745.869 kb on + strand, within ABID97_RS13180at 2746.601 kb on - strand, within ABID97_RS13185at 2746.612 kb on + strand, within ABID97_RS13185at 2746.612 kb on + strand, within ABID97_RS13185at 2747.016 kb on + strand, within ABID97_RS13185at 2747.017 kb on - strand, within ABID97_RS13185at 2747.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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2,744,423 + ABID97_RS13170 0.65 +0.0
2,744,423 + ABID97_RS13170 0.65 -0.4
2,744,789 + ABID97_RS13175 0.15 -0.9
2,744,790 - ABID97_RS13175 0.16 -0.5
2,744,790 - ABID97_RS13175 0.16 +1.0
2,744,790 - ABID97_RS13175 0.16 -0.2
2,744,819 + ABID97_RS13175 0.19 -0.9
2,744,968 - ABID97_RS13175 0.40 +0.7
2,745,234 - ABID97_RS13175 0.75 -0.2
2,745,722 + ABID97_RS13180 0.31 +0.6
2,745,869 + ABID97_RS13180 0.46 +0.7
2,746,601 - ABID97_RS13185 0.23 +0.3
2,746,612 + ABID97_RS13185 0.24 +0.6
2,746,612 + ABID97_RS13185 0.24 +0.3
2,747,016 + ABID97_RS13185 0.71 +0.5
2,747,017 - ABID97_RS13185 0.71 +0.1
2,747,393 - -0.1

Or see this region's nucleotide sequence