Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13170 and ABID97_RS13175 are separated by 1 nucleotides ABID97_RS13175 and ABID97_RS13180 overlap by 4 nucleotides ABID97_RS13180 and ABID97_RS13185 are separated by 5 nucleotides ABID97_RS13185 and ABID97_RS13190 are separated by 36 nucleotides
ABID97_RS13170: ABID97_RS13170 - ABC transporter ATP-binding protein, at 2,743,960 to 2,744,673
_RS13170
ABID97_RS13175: ABID97_RS13175 - ABC transporter ATP-binding protein, at 2,744,675 to 2,745,415
_RS13175
ABID97_RS13180: ABID97_RS13180 - branched-chain amino acid ABC transporter permease, at 2,745,412 to 2,746,401
_RS13180
ABID97_RS13185: ABID97_RS13185 - branched-chain amino acid ABC transporter permease, at 2,746,407 to 2,747,264
_RS13185
ABID97_RS13190: ABID97_RS13190 - ABC transporter substrate-binding protein, at 2,747,301 to 2,748,479
_RS13190
Position (kb)
2745
2746
2747 Strain fitness (log2 ratio)
-1
0
1 at 2744.423 kb on + strand, within ABID97_RS13170 at 2744.423 kb on + strand, within ABID97_RS13170 at 2744.789 kb on + strand, within ABID97_RS13175 at 2744.790 kb on - strand, within ABID97_RS13175 at 2744.790 kb on - strand, within ABID97_RS13175 at 2744.790 kb on - strand, within ABID97_RS13175 at 2744.819 kb on + strand, within ABID97_RS13175 at 2744.968 kb on - strand, within ABID97_RS13175 at 2745.234 kb on - strand, within ABID97_RS13175 at 2745.722 kb on + strand, within ABID97_RS13180 at 2745.869 kb on + strand, within ABID97_RS13180 at 2746.601 kb on - strand, within ABID97_RS13185 at 2746.612 kb on + strand, within ABID97_RS13185 at 2746.612 kb on + strand, within ABID97_RS13185 at 2747.016 kb on + strand, within ABID97_RS13185 at 2747.017 kb on - strand, within ABID97_RS13185 at 2747.393 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 2,744,423 + ABID97_RS13170 0.65 +0.0 2,744,423 + ABID97_RS13170 0.65 -0.4 2,744,789 + ABID97_RS13175 0.15 -0.9 2,744,790 - ABID97_RS13175 0.16 -0.5 2,744,790 - ABID97_RS13175 0.16 +1.0 2,744,790 - ABID97_RS13175 0.16 -0.2 2,744,819 + ABID97_RS13175 0.19 -0.9 2,744,968 - ABID97_RS13175 0.40 +0.7 2,745,234 - ABID97_RS13175 0.75 -0.2 2,745,722 + ABID97_RS13180 0.31 +0.6 2,745,869 + ABID97_RS13180 0.46 +0.7 2,746,601 - ABID97_RS13185 0.23 +0.3 2,746,612 + ABID97_RS13185 0.24 +0.6 2,746,612 + ABID97_RS13185 0.24 +0.3 2,747,016 + ABID97_RS13185 0.71 +0.5 2,747,017 - ABID97_RS13185 0.71 +0.1 2,747,393 - -0.1
Or see this region's nucleotide sequence