Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12030

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS12025 and ABID97_RS12030 are separated by 265 nucleotidesABID97_RS12030 and ABID97_RS12035 are separated by 10 nucleotides ABID97_RS12025: ABID97_RS12025 - OBAP family protein, at 2,482,724 to 2,483,512 _RS12025 ABID97_RS12030: ABID97_RS12030 - CheR family methyltransferase, at 2,483,778 to 2,487,920 _RS12030 ABID97_RS12035: ABID97_RS12035 - NUDIX domain-containing protein, at 2,487,931 to 2,489,265 _RS12035 Position (kb) 2483 2484 2485 2486 2487 2488Strain fitness (log2 ratio) -1 0 1at 2482.800 kb on - strandat 2483.028 kb on + strand, within ABID97_RS12025at 2483.075 kb on + strand, within ABID97_RS12025at 2483.182 kb on - strand, within ABID97_RS12025at 2484.063 kb on + strandat 2484.063 kb on + strandat 2484.064 kb on - strandat 2484.064 kb on - strandat 2484.064 kb on - strandat 2484.525 kb on + strand, within ABID97_RS12030at 2484.823 kb on - strand, within ABID97_RS12030at 2485.670 kb on - strand, within ABID97_RS12030at 2488.325 kb on + strand, within ABID97_RS12035at 2488.325 kb on + strand, within ABID97_RS12035at 2488.326 kb on - strand, within ABID97_RS12035at 2488.326 kb on - strand, within ABID97_RS12035at 2488.406 kb on + strand, within ABID97_RS12035at 2488.784 kb on + strand, within ABID97_RS12035at 2488.784 kb on + strand, within ABID97_RS12035

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
2,482,800 - -1.0
2,483,028 + ABID97_RS12025 0.39 +0.9
2,483,075 + ABID97_RS12025 0.44 -1.5
2,483,182 - ABID97_RS12025 0.58 +0.3
2,484,063 + -0.1
2,484,063 + -0.5
2,484,064 - -0.3
2,484,064 - -0.9
2,484,064 - -0.3
2,484,525 + ABID97_RS12030 0.18 -0.2
2,484,823 - ABID97_RS12030 0.25 -1.0
2,485,670 - ABID97_RS12030 0.46 -1.6
2,488,325 + ABID97_RS12035 0.30 -0.1
2,488,325 + ABID97_RS12035 0.30 -1.2
2,488,326 - ABID97_RS12035 0.30 -0.1
2,488,326 - ABID97_RS12035 0.30 -0.8
2,488,406 + ABID97_RS12035 0.36 -1.2
2,488,784 + ABID97_RS12035 0.64 -0.4
2,488,784 + ABID97_RS12035 0.64 -0.9

Or see this region's nucleotide sequence