Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09170

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09160 and ABID97_RS09165 are separated by 18 nucleotidesABID97_RS09165 and ABID97_RS09170 are separated by 10 nucleotidesABID97_RS09170 and ABID97_RS09175 are separated by 43 nucleotidesABID97_RS09175 and ABID97_RS09180 are separated by 97 nucleotides ABID97_RS09160: ABID97_RS09160 - DUF3999 domain-containing protein, at 1,925,388 to 1,926,929 _RS09160 ABID97_RS09165: ABID97_RS09165 - BPSS1780 family membrane protein, at 1,926,948 to 1,927,778 _RS09165 ABID97_RS09170: ABID97_RS09170 - homoserine kinase, at 1,927,789 to 1,928,835 _RS09170 ABID97_RS09175: ABID97_RS09175 - hypothetical protein, at 1,928,879 to 1,929,244 _RS09175 ABID97_RS09180: ABID97_RS09180 - DNA polymerase I, at 1,929,342 to 1,932,164 _RS09180 Position (kb) 1927 1928 1929Strain fitness (log2 ratio) -1 0 1at 1927.166 kb on - strand, within ABID97_RS09165at 1927.363 kb on + strand, within ABID97_RS09165at 1927.364 kb on - strand, within ABID97_RS09165at 1927.423 kb on + strand, within ABID97_RS09165at 1927.423 kb on + strand, within ABID97_RS09165at 1927.423 kb on + strand, within ABID97_RS09165at 1927.424 kb on - strand, within ABID97_RS09165at 1927.424 kb on - strand, within ABID97_RS09165at 1927.424 kb on - strand, within ABID97_RS09165at 1927.561 kb on + strand, within ABID97_RS09165at 1927.561 kb on + strand, within ABID97_RS09165at 1927.562 kb on - strand, within ABID97_RS09165at 1927.562 kb on - strand, within ABID97_RS09165at 1929.030 kb on + strand, within ABID97_RS09175at 1929.255 kb on + strandat 1929.255 kb on + strandat 1929.255 kb on + strandat 1929.256 kb on - strandat 1929.256 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,927,166 - ABID97_RS09165 0.26 -0.3
1,927,363 + ABID97_RS09165 0.50 +0.4
1,927,364 - ABID97_RS09165 0.50 +0.2
1,927,423 + ABID97_RS09165 0.57 +0.4
1,927,423 + ABID97_RS09165 0.57 -0.7
1,927,423 + ABID97_RS09165 0.57 +0.2
1,927,424 - ABID97_RS09165 0.57 +0.0
1,927,424 - ABID97_RS09165 0.57 +0.4
1,927,424 - ABID97_RS09165 0.57 +0.2
1,927,561 + ABID97_RS09165 0.74 -0.7
1,927,561 + ABID97_RS09165 0.74 +0.8
1,927,562 - ABID97_RS09165 0.74 +0.1
1,927,562 - ABID97_RS09165 0.74 -0.3
1,929,030 + ABID97_RS09175 0.41 +0.2
1,929,255 + +0.2
1,929,255 + +0.6
1,929,255 + -0.6
1,929,256 - -0.2
1,929,256 - +0.6

Or see this region's nucleotide sequence