Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08970

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08965 and ABID97_RS08970 are separated by 79 nucleotidesABID97_RS08970 and ABID97_RS08975 overlap by 1 nucleotides ABID97_RS08965: ABID97_RS08965 - type VI secretion system baseplate subunit TssK, at 1,878,784 to 1,880,139 _RS08965 ABID97_RS08970: ABID97_RS08970 - type VI secretion system tip protein TssI/VgrG, at 1,880,219 to 1,882,798 _RS08970 ABID97_RS08975: ABID97_RS08975 - DUF4123 domain-containing protein, at 1,882,798 to 1,883,736 _RS08975 Position (kb) 1880 1881 1882 1883Strain fitness (log2 ratio) -1 0 1 2 3at 1879.332 kb on - strand, within ABID97_RS08965at 1879.599 kb on + strand, within ABID97_RS08965at 1879.759 kb on - strand, within ABID97_RS08965at 1882.590 kb on + strandat 1882.590 kb on + strandat 1882.591 kb on - strandat 1882.809 kb on + strandat 1882.810 kb on - strandat 1882.997 kb on - strand, within ABID97_RS08975at 1883.185 kb on + strand, within ABID97_RS08975at 1883.328 kb on + strand, within ABID97_RS08975at 1883.329 kb on - strand, within ABID97_RS08975at 1883.389 kb on + strand, within ABID97_RS08975at 1883.664 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,879,332 - ABID97_RS08965 0.40 -0.0
1,879,599 + ABID97_RS08965 0.60 +0.5
1,879,759 - ABID97_RS08965 0.72 +0.7
1,882,590 + -0.8
1,882,590 + +1.8
1,882,591 - +3.0
1,882,809 + -0.9
1,882,810 - -0.4
1,882,997 - ABID97_RS08975 0.21 -0.3
1,883,185 + ABID97_RS08975 0.41 +0.4
1,883,328 + ABID97_RS08975 0.56 +1.3
1,883,329 - ABID97_RS08975 0.57 -0.1
1,883,389 + ABID97_RS08975 0.63 +0.8
1,883,664 - -0.1

Or see this region's nucleotide sequence