Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08000

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07995 and ABID97_RS08000 are separated by 110 nucleotidesABID97_RS08000 and ABID97_RS08005 are separated by 26 nucleotides ABID97_RS07995: ABID97_RS07995 - DNA polymerase IV, at 1,680,408 to 1,681,655 _RS07995 ABID97_RS08000: ABID97_RS08000 - putative glycolipid-binding domain-containing protein, at 1,681,766 to 1,682,326 _RS08000 ABID97_RS08005: ABID97_RS08005 - MFS family transporter, at 1,682,353 to 1,683,693 _RS08005 Position (kb) 1681 1682 1683Strain fitness (log2 ratio) -1 0 1 2at 1681.039 kb on + strand, within ABID97_RS07995at 1681.219 kb on + strand, within ABID97_RS07995at 1681.219 kb on + strand, within ABID97_RS07995at 1681.219 kb on + strand, within ABID97_RS07995at 1681.219 kb on + strand, within ABID97_RS07995at 1681.219 kb on + strand, within ABID97_RS07995at 1681.219 kb on + strand, within ABID97_RS07995at 1681.219 kb on + strand, within ABID97_RS07995at 1681.220 kb on - strand, within ABID97_RS07995at 1681.220 kb on - strand, within ABID97_RS07995at 1681.291 kb on + strand, within ABID97_RS07995at 1681.433 kb on - strand, within ABID97_RS07995at 1681.910 kb on + strand, within ABID97_RS08000at 1682.201 kb on + strand, within ABID97_RS08000at 1682.226 kb on - strand, within ABID97_RS08000at 1682.226 kb on - strand, within ABID97_RS08000at 1682.298 kb on - strandat 1682.325 kb on - strandat 1682.372 kb on + strandat 1682.373 kb on - strandat 1682.487 kb on - strand, within ABID97_RS08005at 1682.487 kb on - strand, within ABID97_RS08005at 1682.525 kb on + strand, within ABID97_RS08005at 1682.600 kb on + strand, within ABID97_RS08005at 1682.601 kb on - strand, within ABID97_RS08005at 1682.601 kb on - strand, within ABID97_RS08005at 1682.784 kb on - strand, within ABID97_RS08005at 1682.784 kb on - strand, within ABID97_RS08005at 1682.810 kb on + strand, within ABID97_RS08005at 1682.810 kb on + strand, within ABID97_RS08005at 1682.810 kb on + strand, within ABID97_RS08005at 1682.852 kb on + strand, within ABID97_RS08005at 1682.853 kb on - strand, within ABID97_RS08005at 1682.864 kb on + strand, within ABID97_RS08005at 1682.864 kb on + strand, within ABID97_RS08005at 1682.864 kb on + strand, within ABID97_RS08005at 1682.864 kb on + strand, within ABID97_RS08005at 1682.864 kb on + strand, within ABID97_RS08005at 1682.864 kb on + strand, within ABID97_RS08005at 1682.865 kb on - strand, within ABID97_RS08005at 1682.865 kb on - strand, within ABID97_RS08005at 1682.880 kb on - strand, within ABID97_RS08005at 1683.165 kb on - strand, within ABID97_RS08005at 1683.218 kb on + strand, within ABID97_RS08005at 1683.218 kb on + strand, within ABID97_RS08005at 1683.218 kb on + strand, within ABID97_RS08005at 1683.218 kb on + strand, within ABID97_RS08005at 1683.218 kb on + strand, within ABID97_RS08005at 1683.218 kb on + strand, within ABID97_RS08005at 1683.218 kb on + strand, within ABID97_RS08005at 1683.219 kb on - strand, within ABID97_RS08005at 1683.219 kb on - strand, within ABID97_RS08005at 1683.219 kb on - strand, within ABID97_RS08005at 1683.315 kb on - strand, within ABID97_RS08005at 1683.315 kb on - strand, within ABID97_RS08005

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,681,039 + ABID97_RS07995 0.51 +2.6
1,681,219 + ABID97_RS07995 0.65 -0.3
1,681,219 + ABID97_RS07995 0.65 -0.0
1,681,219 + ABID97_RS07995 0.65 -0.0
1,681,219 + ABID97_RS07995 0.65 +0.1
1,681,219 + ABID97_RS07995 0.65 +1.1
1,681,219 + ABID97_RS07995 0.65 -0.1
1,681,219 + ABID97_RS07995 0.65 +0.0
1,681,220 - ABID97_RS07995 0.65 +1.4
1,681,220 - ABID97_RS07995 0.65 +0.3
1,681,291 + ABID97_RS07995 0.71 -0.1
1,681,433 - ABID97_RS07995 0.82 -0.1
1,681,910 + ABID97_RS08000 0.26 -0.7
1,682,201 + ABID97_RS08000 0.78 -0.7
1,682,226 - ABID97_RS08000 0.82 -0.9
1,682,226 - ABID97_RS08000 0.82 -0.8
1,682,298 - -0.9
1,682,325 - +0.3
1,682,372 + -0.1
1,682,373 - -0.1
1,682,487 - ABID97_RS08005 0.10 -0.0
1,682,487 - ABID97_RS08005 0.10 +0.2
1,682,525 + ABID97_RS08005 0.13 -1.4
1,682,600 + ABID97_RS08005 0.18 +0.1
1,682,601 - ABID97_RS08005 0.18 +0.1
1,682,601 - ABID97_RS08005 0.18 -0.0
1,682,784 - ABID97_RS08005 0.32 +1.0
1,682,784 - ABID97_RS08005 0.32 +0.1
1,682,810 + ABID97_RS08005 0.34 -0.5
1,682,810 + ABID97_RS08005 0.34 +0.1
1,682,810 + ABID97_RS08005 0.34 +0.3
1,682,852 + ABID97_RS08005 0.37 -0.8
1,682,853 - ABID97_RS08005 0.37 -0.0
1,682,864 + ABID97_RS08005 0.38 -0.1
1,682,864 + ABID97_RS08005 0.38 +0.7
1,682,864 + ABID97_RS08005 0.38 +0.4
1,682,864 + ABID97_RS08005 0.38 +1.3
1,682,864 + ABID97_RS08005 0.38 +0.2
1,682,864 + ABID97_RS08005 0.38 -1.0
1,682,865 - ABID97_RS08005 0.38 +0.6
1,682,865 - ABID97_RS08005 0.38 +0.6
1,682,880 - ABID97_RS08005 0.39 -0.1
1,683,165 - ABID97_RS08005 0.61 +0.2
1,683,218 + ABID97_RS08005 0.65 -0.5
1,683,218 + ABID97_RS08005 0.65 -0.1
1,683,218 + ABID97_RS08005 0.65 -0.1
1,683,218 + ABID97_RS08005 0.65 +0.6
1,683,218 + ABID97_RS08005 0.65 +1.1
1,683,218 + ABID97_RS08005 0.65 +0.3
1,683,218 + ABID97_RS08005 0.65 +0.2
1,683,219 - ABID97_RS08005 0.65 +0.8
1,683,219 - ABID97_RS08005 0.65 +0.9
1,683,219 - ABID97_RS08005 0.65 +0.4
1,683,315 - ABID97_RS08005 0.72 +1.6
1,683,315 - ABID97_RS08005 0.72 -0.0

Or see this region's nucleotide sequence