Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02750 and ABID97_RS02755 are separated by 67 nucleotides ABID97_RS02755 and ABID97_RS02760 overlap by 4 nucleotides ABID97_RS02760 and ABID97_RS02765 are separated by 7 nucleotides ABID97_RS02765 and ABID97_RS02770 overlap by 20 nucleotides
ABID97_RS02750: ABID97_RS02750 - pirin family protein, at 560,281 to 561,180
_RS02750
ABID97_RS02755: ABID97_RS02755 - GNAT family N-acetyltransferase, at 561,248 to 562,000
_RS02755
ABID97_RS02760: ABID97_RS02760 - biosynthetic peptidoglycan transglycosylase, at 561,997 to 563,265
_RS02760
ABID97_RS02765: ABID97_RS02765 - hypothetical protein, at 563,273 to 563,842
_RS02765
ABID97_RS02770: ABID97_RS02770 - exosortase Q, at 563,823 to 564,752
_RS02770
Position (kb) 561
562
563
564 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 561.197 kb on + strand at 561.276 kb on + strand at 561.282 kb on + strand at 561.534 kb on + strand, within ABID97_RS02755 at 561.534 kb on + strand, within ABID97_RS02755 at 561.535 kb on - strand, within ABID97_RS02755 at 561.732 kb on + strand, within ABID97_RS02755 at 561.732 kb on + strand, within ABID97_RS02755 at 561.732 kb on + strand, within ABID97_RS02755 at 561.732 kb on + strand, within ABID97_RS02755 at 561.732 kb on + strand, within ABID97_RS02755 at 561.733 kb on - strand, within ABID97_RS02755 at 561.733 kb on - strand, within ABID97_RS02755 at 561.733 kb on - strand, within ABID97_RS02755 at 561.733 kb on - strand, within ABID97_RS02755 at 561.733 kb on - strand, within ABID97_RS02755 at 561.733 kb on - strand, within ABID97_RS02755 at 561.819 kb on + strand, within ABID97_RS02755 at 561.982 kb on + strand at 561.983 kb on - strand at 562.226 kb on + strand, within ABID97_RS02760 at 562.226 kb on + strand, within ABID97_RS02760 at 562.226 kb on + strand, within ABID97_RS02760 at 562.286 kb on + strand, within ABID97_RS02760 at 562.337 kb on + strand, within ABID97_RS02760 at 562.337 kb on + strand, within ABID97_RS02760 at 562.338 kb on - strand, within ABID97_RS02760 at 562.338 kb on - strand, within ABID97_RS02760 at 563.238 kb on - strand at 563.340 kb on + strand, within ABID97_RS02765 at 563.340 kb on + strand, within ABID97_RS02765 at 563.340 kb on + strand, within ABID97_RS02765 at 563.341 kb on - strand, within ABID97_RS02765 at 564.136 kb on + strand, within ABID97_RS02770
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 561,197 + -0.0 561,276 + +1.1 561,282 + -0.0 561,534 + ABID97_RS02755 0.38 +0.1 561,534 + ABID97_RS02755 0.38 -0.7 561,535 - ABID97_RS02755 0.38 -0.8 561,732 + ABID97_RS02755 0.64 -0.1 561,732 + ABID97_RS02755 0.64 -0.9 561,732 + ABID97_RS02755 0.64 -1.0 561,732 + ABID97_RS02755 0.64 -1.1 561,732 + ABID97_RS02755 0.64 -0.4 561,733 - ABID97_RS02755 0.64 +0.1 561,733 - ABID97_RS02755 0.64 +0.0 561,733 - ABID97_RS02755 0.64 -0.5 561,733 - ABID97_RS02755 0.64 -0.5 561,733 - ABID97_RS02755 0.64 -0.9 561,733 - ABID97_RS02755 0.64 +0.6 561,819 + ABID97_RS02755 0.76 +0.1 561,982 + +1.8 561,983 - -1.3 562,226 + ABID97_RS02760 0.18 +0.1 562,226 + ABID97_RS02760 0.18 +0.2 562,226 + ABID97_RS02760 0.18 +0.7 562,286 + ABID97_RS02760 0.23 +0.3 562,337 + ABID97_RS02760 0.27 +0.2 562,337 + ABID97_RS02760 0.27 -1.5 562,338 - ABID97_RS02760 0.27 +0.2 562,338 - ABID97_RS02760 0.27 +0.3 563,238 - -0.1 563,340 + ABID97_RS02765 0.12 +4.3 563,340 + ABID97_RS02765 0.12 -0.1 563,340 + ABID97_RS02765 0.12 -0.4 563,341 - ABID97_RS02765 0.12 -1.1 564,136 + ABID97_RS02770 0.34 +0.2
Or see this region's nucleotide sequence