Strain Fitness in Escherichia coli BW25113 around b4381
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,614,382 | - | yjjI | b4380 | 0.54 | +1.7 |
4,614,382 | - | yjjI | b4380 | 0.54 | +1.5 |
4,614,386 | + | yjjI | b4380 | 0.55 | -1.1 |
4,614,386 | + | yjjI | b4380 | 0.55 | +0.8 |
4,614,455 | + | yjjI | b4380 | 0.59 | -0.1 |
4,614,642 | - | yjjI | b4380 | 0.71 | -0.5 |
4,614,728 | + | yjjI | b4380 | 0.77 | +1.2 |
4,614,728 | + | yjjI | b4380 | 0.77 | +2.8 |
4,614,728 | + | yjjI | b4380 | 0.77 | +1.1 |
4,614,757 | - | yjjI | b4380 | 0.79 | -0.1 |
4,614,757 | - | yjjI | b4380 | 0.79 | -1.3 |
4,614,761 | + | yjjI | b4380 | 0.79 | -0.1 |
4,614,766 | - | yjjI | b4380 | 0.79 | -1.4 |
4,614,769 | - | yjjI | b4380 | 0.79 | +1.4 |
4,614,769 | - | yjjI | b4380 | 0.79 | +1.7 |
4,614,918 | + | yjjI | b4380 | 0.89 | +1.3 |
4,614,918 | + | +1.5 | |||
4,615,054 | + | +1.5 | |||
4,615,054 | + | -0.5 | |||
4,615,213 | + | +1.0 | |||
4,615,213 | + | +0.7 | |||
4,615,233 | + | +3.7 | |||
4,615,261 | + | -2.1 | |||
4,615,403 | - | -1.8 | |||
4,615,505 | - | deoC | b4381 | 0.20 | -0.7 |
4,615,505 | - | deoC | b4381 | 0.20 | -1.1 |
4,615,724 | - | deoC | b4381 | 0.48 | +1.7 |
4,615,727 | - | deoC | b4381 | 0.49 | -1.5 |
4,615,734 | - | deoC | b4381 | 0.50 | +0.6 |
4,615,750 | + | deoC | b4381 | 0.52 | -2.2 |
4,615,829 | + | deoC | b4381 | 0.62 | +2.2 |
4,615,829 | + | deoC | b4381 | 0.62 | -0.8 |
4,615,837 | - | deoC | b4381 | 0.63 | -0.6 |
4,616,063 | + | +1.5 | |||
4,616,133 | + | +2.1 | |||
4,616,148 | - | -0.8 | |||
4,616,174 | + | +0.1 | |||
4,616,198 | + | +1.7 | |||
4,616,494 | - | deoA | b4382 | 0.18 | +1.3 |
4,616,494 | - | deoA | b4382 | 0.18 | -1.7 |
4,616,511 | - | deoA | b4382 | 0.20 | +1.4 |
4,616,563 | - | deoA | b4382 | 0.24 | -1.5 |
4,616,606 | - | deoA | b4382 | 0.27 | -0.0 |
4,616,663 | + | deoA | b4382 | 0.31 | +2.1 |
4,616,727 | - | deoA | b4382 | 0.36 | +1.4 |
4,616,731 | + | deoA | b4382 | 0.36 | -1.3 |
4,616,749 | + | deoA | b4382 | 0.38 | +0.5 |
4,616,760 | + | deoA | b4382 | 0.38 | +0.3 |
4,616,791 | - | deoA | b4382 | 0.41 | +0.3 |
4,616,823 | - | deoA | b4382 | 0.43 | +1.5 |
4,616,940 | - | deoA | b4382 | 0.52 | +0.9 |
4,616,958 | - | deoA | b4382 | 0.53 | -2.7 |
4,616,958 | - | deoA | b4382 | 0.53 | -0.8 |
4,616,965 | + | deoA | b4382 | 0.54 | -0.1 |
4,616,984 | + | deoA | b4382 | 0.55 | -1.3 |
4,616,987 | - | deoA | b4382 | 0.56 | +0.4 |
4,616,987 | - | deoA | b4382 | 0.56 | +0.5 |
4,616,997 | + | deoA | b4382 | 0.56 | -0.4 |
4,617,084 | - | deoA | b4382 | 0.63 | +0.5 |
4,617,088 | + | deoA | b4382 | 0.63 | +1.4 |
Or see this region's nucleotide sequence