Strain Fitness in Escherichia coli BW25113 around b4381

Experiment: Benzalkonium Chloride 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyjjI and deoC are separated by 257 nucleotidesdeoC and deoA are separated by 126 nucleotides b4380: yjjI - hypothetical protein (NCBI), at 4,613,538 to 4,615,088 yjjI b4381: deoC - deoxyribose-phosphate aldolase (NCBI), at 4,615,346 to 4,616,125 deoC b4382: deoA - thymidine phosphorylase (NCBI), at 4,616,252 to 4,617,574 deoA Position (kb) 4615 4616 4617Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4614.382 kb on - strand, within yjjIat 4614.382 kb on - strand, within yjjIat 4614.386 kb on + strand, within yjjIat 4614.386 kb on + strand, within yjjIat 4614.455 kb on + strand, within yjjIat 4614.642 kb on - strand, within yjjIat 4614.728 kb on + strand, within yjjIat 4614.728 kb on + strand, within yjjIat 4614.728 kb on + strand, within yjjIat 4614.757 kb on - strand, within yjjIat 4614.757 kb on - strand, within yjjIat 4614.761 kb on + strand, within yjjIat 4614.766 kb on - strand, within yjjIat 4614.769 kb on - strand, within yjjIat 4614.769 kb on - strand, within yjjIat 4614.918 kb on + strand, within yjjIat 4614.918 kb on + strandat 4615.054 kb on + strandat 4615.054 kb on + strandat 4615.213 kb on + strandat 4615.213 kb on + strandat 4615.233 kb on + strandat 4615.261 kb on + strandat 4615.403 kb on - strandat 4615.505 kb on - strand, within deoCat 4615.505 kb on - strand, within deoCat 4615.724 kb on - strand, within deoCat 4615.727 kb on - strand, within deoCat 4615.734 kb on - strand, within deoCat 4615.750 kb on + strand, within deoCat 4615.829 kb on + strand, within deoCat 4615.829 kb on + strand, within deoCat 4615.837 kb on - strand, within deoCat 4616.063 kb on + strandat 4616.133 kb on + strandat 4616.148 kb on - strandat 4616.174 kb on + strandat 4616.198 kb on + strandat 4616.494 kb on - strand, within deoAat 4616.494 kb on - strand, within deoAat 4616.511 kb on - strand, within deoAat 4616.563 kb on - strand, within deoAat 4616.606 kb on - strand, within deoAat 4616.663 kb on + strand, within deoAat 4616.727 kb on - strand, within deoAat 4616.731 kb on + strand, within deoAat 4616.749 kb on + strand, within deoAat 4616.760 kb on + strand, within deoAat 4616.791 kb on - strand, within deoAat 4616.823 kb on - strand, within deoAat 4616.940 kb on - strand, within deoAat 4616.958 kb on - strand, within deoAat 4616.958 kb on - strand, within deoAat 4616.965 kb on + strand, within deoAat 4616.984 kb on + strand, within deoAat 4616.987 kb on - strand, within deoAat 4616.987 kb on - strand, within deoAat 4616.997 kb on + strand, within deoAat 4617.084 kb on - strand, within deoAat 4617.088 kb on + strand, within deoA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
remove
4,614,382 - yjjI b4380 0.54 +1.7
4,614,382 - yjjI b4380 0.54 +1.5
4,614,386 + yjjI b4380 0.55 -1.1
4,614,386 + yjjI b4380 0.55 +0.8
4,614,455 + yjjI b4380 0.59 -0.1
4,614,642 - yjjI b4380 0.71 -0.5
4,614,728 + yjjI b4380 0.77 +1.2
4,614,728 + yjjI b4380 0.77 +2.8
4,614,728 + yjjI b4380 0.77 +1.1
4,614,757 - yjjI b4380 0.79 -0.1
4,614,757 - yjjI b4380 0.79 -1.3
4,614,761 + yjjI b4380 0.79 -0.1
4,614,766 - yjjI b4380 0.79 -1.4
4,614,769 - yjjI b4380 0.79 +1.4
4,614,769 - yjjI b4380 0.79 +1.7
4,614,918 + yjjI b4380 0.89 +1.3
4,614,918 + +1.5
4,615,054 + +1.5
4,615,054 + -0.5
4,615,213 + +1.0
4,615,213 + +0.7
4,615,233 + +3.7
4,615,261 + -2.1
4,615,403 - -1.8
4,615,505 - deoC b4381 0.20 -0.7
4,615,505 - deoC b4381 0.20 -1.1
4,615,724 - deoC b4381 0.48 +1.7
4,615,727 - deoC b4381 0.49 -1.5
4,615,734 - deoC b4381 0.50 +0.6
4,615,750 + deoC b4381 0.52 -2.2
4,615,829 + deoC b4381 0.62 +2.2
4,615,829 + deoC b4381 0.62 -0.8
4,615,837 - deoC b4381 0.63 -0.6
4,616,063 + +1.5
4,616,133 + +2.1
4,616,148 - -0.8
4,616,174 + +0.1
4,616,198 + +1.7
4,616,494 - deoA b4382 0.18 +1.3
4,616,494 - deoA b4382 0.18 -1.7
4,616,511 - deoA b4382 0.20 +1.4
4,616,563 - deoA b4382 0.24 -1.5
4,616,606 - deoA b4382 0.27 -0.0
4,616,663 + deoA b4382 0.31 +2.1
4,616,727 - deoA b4382 0.36 +1.4
4,616,731 + deoA b4382 0.36 -1.3
4,616,749 + deoA b4382 0.38 +0.5
4,616,760 + deoA b4382 0.38 +0.3
4,616,791 - deoA b4382 0.41 +0.3
4,616,823 - deoA b4382 0.43 +1.5
4,616,940 - deoA b4382 0.52 +0.9
4,616,958 - deoA b4382 0.53 -2.7
4,616,958 - deoA b4382 0.53 -0.8
4,616,965 + deoA b4382 0.54 -0.1
4,616,984 + deoA b4382 0.55 -1.3
4,616,987 - deoA b4382 0.56 +0.4
4,616,987 - deoA b4382 0.56 +0.5
4,616,997 + deoA b4382 0.56 -0.4
4,617,084 - deoA b4382 0.63 +0.5
4,617,088 + deoA b4382 0.63 +1.4

Or see this region's nucleotide sequence