Strain Fitness in Escherichia coli BW25113 around b4107
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,322,328 | + | +1.8 | |||
4,322,335 | - | +3.3 | |||
4,322,415 | + | +1.8 | |||
4,322,415 | + | -1.6 | |||
4,322,429 | + | -0.7 | |||
4,322,463 | + | -1.7 | |||
4,322,471 | + | -2.4 | |||
4,322,471 | + | -2.4 | |||
4,322,525 | + | phnC | b4106 | 0.16 | -0.6 |
4,322,538 | - | phnC | b4106 | 0.17 | -0.2 |
4,322,563 | + | phnC | b4106 | 0.21 | +1.3 |
4,322,563 | + | phnC | b4106 | 0.21 | +0.9 |
4,322,841 | - | phnC | b4106 | 0.56 | -1.3 |
4,322,856 | - | phnC | b4106 | 0.58 | -1.1 |
4,322,915 | + | phnC | b4106 | 0.65 | +1.2 |
4,322,915 | + | phnC | b4106 | 0.65 | +2.2 |
4,322,963 | - | phnC | b4106 | 0.71 | +0.8 |
4,322,988 | - | phnC | b4106 | 0.75 | -1.7 |
4,323,255 | + | +0.6 | |||
4,323,352 | + | -2.6 | |||
4,323,369 | + | phnB | b4107 | 0.11 | +2.3 |
4,323,369 | + | phnB | b4107 | 0.11 | +1.9 |
4,323,387 | + | phnB | b4107 | 0.15 | -1.3 |
4,323,500 | + | phnB | b4107 | 0.40 | -0.7 |
4,323,544 | - | phnB | b4107 | 0.50 | +3.2 |
4,323,556 | - | phnB | b4107 | 0.53 | +1.6 |
4,323,556 | - | phnB | b4107 | 0.53 | +1.0 |
4,323,568 | + | phnB | b4107 | 0.56 | -1.0 |
4,323,613 | + | phnB | b4107 | 0.66 | +1.2 |
4,323,686 | - | phnB | b4107 | 0.82 | -1.9 |
4,323,686 | - | phnB | b4107 | 0.82 | +0.7 |
4,323,686 | - | phnB | b4107 | 0.82 | -1.7 |
4,323,769 | - | +2.9 | |||
4,323,769 | - | -0.4 | |||
4,323,776 | + | -1.7 | |||
4,323,826 | - | -0.4 | |||
4,323,860 | - | -2.3 | |||
4,324,091 | + | -1.0 | |||
4,324,091 | + | -1.4 | |||
4,324,101 | + | -2.9 | |||
4,324,323 | + | -0.1 | |||
4,324,392 | + | +0.6 | |||
4,324,392 | + | -0.4 | |||
4,324,414 | + | +0.8 | |||
4,324,506 | - | phnA | b4108 | 0.25 | -1.4 |
4,324,506 | - | phnA | b4108 | 0.25 | +3.3 |
4,324,571 | - | phnA | b4108 | 0.44 | +3.6 |
4,324,571 | - | phnA | b4108 | 0.44 | -0.7 |
4,324,607 | - | phnA | b4108 | 0.55 | +1.6 |
4,324,654 | + | phnA | b4108 | 0.69 | +0.9 |
4,324,692 | + | phnA | b4108 | 0.80 | +0.5 |
4,324,700 | - | phnA | b4108 | 0.83 | +1.0 |
4,324,700 | - | phnA | b4108 | 0.83 | +1.0 |
4,324,701 | - | phnA | b4108 | 0.83 | -0.7 |
4,324,701 | - | phnA | b4108 | 0.83 | +1.6 |
4,324,711 | + | phnA | b4108 | 0.86 | -1.9 |
4,324,719 | - | phnA | b4108 | 0.88 | +2.7 |
4,324,741 | - | -1.0 | |||
4,324,751 | - | +0.9 | |||
4,324,751 | - | +0.8 | |||
4,324,751 | - | +1.4 | |||
4,324,751 | - | +1.6 | |||
4,324,751 | - | -0.6 | |||
4,324,755 | - | +1.6 | |||
4,324,755 | - | -0.7 |
Or see this region's nucleotide sequence