Strain Fitness in Escherichia coli BW25113 around b4034
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,242,338 | - | malF | b4033 | 0.51 | -1.9 |
4,242,338 | - | malF | b4033 | 0.51 | -1.5 |
4,242,362 | + | malF | b4033 | 0.52 | +0.7 |
4,242,385 | - | malF | b4033 | 0.54 | -1.3 |
4,242,432 | + | malF | b4033 | 0.57 | -1.8 |
4,242,434 | - | malF | b4033 | 0.57 | -1.8 |
4,242,438 | - | malF | b4033 | 0.57 | -0.9 |
4,242,455 | - | malF | b4033 | 0.58 | +3.2 |
4,242,472 | - | malF | b4033 | 0.59 | -0.2 |
4,242,472 | - | malF | b4033 | 0.59 | +0.7 |
4,242,472 | - | malF | b4033 | 0.59 | +2.2 |
4,242,515 | - | malF | b4033 | 0.62 | +0.8 |
4,242,809 | + | malF | b4033 | 0.81 | +3.2 |
4,242,847 | + | malF | b4033 | 0.84 | +0.7 |
4,242,850 | - | malF | b4033 | 0.84 | +0.7 |
4,242,850 | - | malF | b4033 | 0.84 | -1.8 |
4,242,883 | - | malF | b4033 | 0.86 | +1.2 |
4,242,896 | + | malF | b4033 | 0.87 | +0.1 |
4,242,896 | + | malF | b4033 | 0.87 | -2.0 |
4,242,907 | + | malF | b4033 | 0.88 | -0.9 |
4,242,929 | + | malF | b4033 | 0.89 | -1.0 |
4,242,950 | - | +0.5 | |||
4,242,987 | - | -2.8 | |||
4,243,036 | + | -0.7 | |||
4,243,040 | + | -1.7 | |||
4,243,094 | + | -1.2 | |||
4,243,107 | + | -1.3 | |||
4,243,121 | - | -0.1 | |||
4,243,183 | - | -1.3 | |||
4,243,244 | + | -0.6 | |||
4,243,343 | - | -1.7 | |||
4,243,343 | - | -0.9 | |||
4,243,346 | - | -1.0 | |||
4,243,417 | + | malE | b4034 | 0.14 | +1.1 |
4,243,417 | + | malE | b4034 | 0.14 | -1.3 |
4,243,542 | + | malE | b4034 | 0.24 | +0.5 |
4,243,596 | + | malE | b4034 | 0.29 | -0.2 |
4,243,596 | + | malE | b4034 | 0.29 | +0.1 |
4,243,618 | + | malE | b4034 | 0.31 | -0.7 |
4,243,621 | + | malE | b4034 | 0.31 | +0.8 |
4,243,661 | + | malE | b4034 | 0.34 | -1.3 |
4,243,661 | + | malE | b4034 | 0.34 | -1.9 |
4,243,661 | + | malE | b4034 | 0.34 | -1.1 |
4,243,682 | - | malE | b4034 | 0.36 | -1.2 |
4,243,682 | - | malE | b4034 | 0.36 | +0.7 |
4,243,781 | + | malE | b4034 | 0.44 | -3.0 |
4,243,808 | + | malE | b4034 | 0.47 | +0.2 |
4,243,939 | - | malE | b4034 | 0.58 | -2.3 |
4,243,952 | + | malE | b4034 | 0.59 | +1.8 |
4,243,957 | + | malE | b4034 | 0.59 | -0.3 |
4,244,016 | + | malE | b4034 | 0.64 | -0.3 |
4,244,046 | + | malE | b4034 | 0.67 | +0.4 |
4,244,050 | + | malE | b4034 | 0.67 | -1.8 |
4,244,058 | + | malE | b4034 | 0.68 | -1.3 |
4,244,112 | - | malE | b4034 | 0.72 | +0.7 |
4,244,154 | - | malE | b4034 | 0.76 | -1.3 |
4,244,154 | - | malE | b4034 | 0.76 | +0.3 |
4,244,174 | + | malE | b4034 | 0.77 | -1.2 |
4,244,174 | + | malE | b4034 | 0.77 | +0.1 |
4,244,185 | + | malE | b4034 | 0.78 | +1.0 |
4,244,198 | - | malE | b4034 | 0.79 | -2.3 |
4,244,210 | + | malE | b4034 | 0.80 | -1.2 |
4,244,417 | - | -0.3 | |||
4,244,466 | - | +0.9 | |||
4,244,491 | + | -0.3 | |||
4,244,491 | + | -1.9 | |||
4,244,537 | + | +1.6 | |||
4,244,537 | + | -0.1 | |||
4,244,809 | + | -1.2 | |||
4,244,840 | + | +1.4 | |||
4,244,925 | - | malK | b4035 | 0.11 | +1.9 |
4,244,925 | - | malK | b4035 | 0.11 | +1.5 |
4,244,960 | + | malK | b4035 | 0.14 | +0.5 |
4,245,007 | + | malK | b4035 | 0.18 | -1.8 |
4,245,018 | + | malK | b4035 | 0.19 | -1.6 |
4,245,154 | + | malK | b4035 | 0.31 | -3.0 |
4,245,154 | + | malK | b4035 | 0.31 | -1.1 |
4,245,162 | - | malK | b4035 | 0.32 | +1.8 |
4,245,228 | - | malK | b4035 | 0.38 | -0.7 |
4,245,240 | + | malK | b4035 | 0.39 | -0.9 |
4,245,240 | + | malK | b4035 | 0.39 | -0.7 |
4,245,289 | + | malK | b4035 | 0.43 | -0.8 |
4,245,308 | - | malK | b4035 | 0.45 | +0.8 |
Or see this region's nucleotide sequence