Strain Fitness in Escherichia coli BW25113 around b3972

Experiment: Benzalkonium Chloride 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrrlB and rrfB are separated by 92 nucleotidesrrfB and murB are separated by 300 nucleotidesmurB and birA overlap by 4 nucleotidesbirA and coaA are separated by 28 nucleotides b3970: rrlB - 23S ribosomal RNA (NCBI), at 4,166,664 to 4,169,567 rrlB b3971: rrfB - 5S ribosomal RNA (NCBI), at 4,169,660 to 4,169,779 rrfB b3972: murB - UDP-N-acetylenolpyruvoylglucosamine reductase (NCBI), at 4,170,080 to 4,171,108 murB b3973: birA - biotin--protein ligase (NCBI), at 4,171,105 to 4,172,070 birA b3974: coaA - pantothenate kinase (NCBI), at 4,172,099 to 4,173,049 coaA Position (kb) 4170 4171 4172Strain fitness (log2 ratio) -1 0 1 2at 4171.110 kb on + strandat 4171.236 kb on + strand, within birAat 4171.284 kb on + strand, within birA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
remove
4,171,110 + -0.7
4,171,236 + birA b3973 0.14 -0.6
4,171,284 + birA b3973 0.19 +2.1

Or see this region's nucleotide sequence