Strain Fitness in Escherichia coli BW25113 around b3844
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,024,500 | + | +1.0 | |||
4,024,586 | + | +2.8 | |||
4,024,586 | + | +4.7 | |||
4,024,586 | - | +4.1 | |||
4,024,586 | - | +3.6 | |||
4,024,599 | + | +3.9 | |||
4,024,600 | + | +0.2 | |||
4,024,600 | + | +4.8 | |||
4,024,608 | - | +3.7 | |||
4,024,608 | - | +3.7 | |||
4,024,649 | + | fre | b3844 | 0.14 | +5.1 |
4,024,674 | - | fre | b3844 | 0.18 | +3.1 |
4,024,693 | + | fre | b3844 | 0.20 | +4.8 |
4,024,701 | - | fre | b3844 | 0.22 | +3.4 |
4,024,780 | + | fre | b3844 | 0.33 | +5.4 |
4,024,780 | + | fre | b3844 | 0.33 | +3.1 |
4,024,801 | - | fre | b3844 | 0.36 | +2.8 |
4,024,823 | + | fre | b3844 | 0.39 | +3.8 |
4,024,856 | - | fre | b3844 | 0.44 | +1.4 |
4,024,856 | - | fre | b3844 | 0.44 | +4.1 |
4,024,891 | + | fre | b3844 | 0.49 | +3.4 |
4,024,898 | - | fre | b3844 | 0.50 | +3.3 |
4,024,905 | + | fre | b3844 | 0.51 | +4.3 |
4,024,905 | + | fre | b3844 | 0.51 | +3.4 |
4,024,968 | + | fre | b3844 | 0.60 | +5.4 |
4,024,968 | + | fre | b3844 | 0.60 | +1.8 |
4,024,971 | + | fre | b3844 | 0.60 | +4.4 |
4,024,976 | - | fre | b3844 | 0.61 | +5.2 |
4,024,994 | - | fre | b3844 | 0.63 | +3.7 |
4,025,044 | + | fre | b3844 | 0.70 | +3.1 |
4,025,068 | + | fre | b3844 | 0.74 | +4.3 |
4,025,105 | + | +5.0 | |||
4,025,132 | - | fre | b3844 | 0.83 | +3.3 |
4,025,208 | - | +3.7 | |||
4,025,285 | - | +1.7 | |||
4,025,293 | + | -0.5 | |||
4,025,307 | - | -1.0 | |||
4,025,307 | - | +2.2 | |||
4,025,341 | - | +1.2 | |||
4,025,376 | - | +1.1 | |||
4,025,376 | - | +0.9 | |||
4,025,410 | - | +1.9 | |||
4,025,437 | + | -0.2 | |||
4,025,437 | + | -2.6 | |||
4,025,442 | - | +2.0 | |||
4,025,442 | - | -0.8 | |||
4,025,451 | - | +0.2 | |||
4,025,451 | - | +2.3 | |||
4,025,507 | + | -0.2 | |||
4,025,600 | + | +0.5 | |||
4,025,649 | + | +0.6 | |||
4,025,652 | + | +1.4 | |||
4,025,653 | + | +1.1 | |||
4,025,660 | - | +1.4 | |||
4,025,678 | - | +0.1 | |||
4,025,678 | - | +0.5 | |||
4,025,678 | - | -0.0 | |||
4,025,758 | + | fadA | b3845 | 0.11 | -0.2 |
4,025,765 | + | fadA | b3845 | 0.11 | -1.6 |
4,025,765 | + | fadA | b3845 | 0.11 | +2.2 |
4,025,766 | - | fadA | b3845 | 0.12 | -0.5 |
4,025,766 | - | fadA | b3845 | 0.12 | +1.8 |
4,025,846 | + | fadA | b3845 | 0.18 | -0.3 |
4,025,907 | - | fadA | b3845 | 0.24 | +2.3 |
4,025,930 | + | fadA | b3845 | 0.26 | -1.5 |
4,025,930 | + | fadA | b3845 | 0.26 | -0.5 |
4,025,955 | - | fadA | b3845 | 0.28 | +0.9 |
4,025,955 | - | fadA | b3845 | 0.28 | -2.2 |
4,025,980 | - | fadA | b3845 | 0.30 | -0.2 |
4,025,980 | - | fadA | b3845 | 0.30 | +0.2 |
4,025,982 | + | fadA | b3845 | 0.30 | +1.1 |
4,025,987 | + | fadA | b3845 | 0.30 | -2.4 |
4,026,002 | - | fadA | b3845 | 0.32 | -1.8 |
4,026,047 | + | fadA | b3845 | 0.36 | +0.5 |
4,026,047 | + | fadA | b3845 | 0.36 | +1.3 |
4,026,075 | + | fadA | b3845 | 0.38 | +0.4 |
4,026,075 | + | fadA | b3845 | 0.38 | -0.2 |
4,026,075 | + | fadA | b3845 | 0.38 | +1.7 |
4,026,163 | + | fadA | b3845 | 0.46 | -0.2 |
4,026,163 | + | fadA | b3845 | 0.46 | +4.6 |
4,026,189 | + | fadA | b3845 | 0.48 | +0.7 |
4,026,198 | - | fadA | b3845 | 0.49 | +1.4 |
4,026,220 | + | fadA | b3845 | 0.51 | -0.8 |
Or see this region's nucleotide sequence