Strain Fitness in Escherichia coli BW25113 around b3844

Experiment: Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntubiD and fre are separated by 45 nucleotidesfre and fadA are separated by 380 nucleotides b3843: ubiD - 3-octaprenyl-4-hydroxybenzoate decarboxylase (NCBI), at 4,023,011 to 4,024,504 ubiD b3844: fre - NAD(P)H-flavin reductase (NCBI), at 4,024,550 to 4,025,251 fre b3845: fadA - acetyl-CoA acetyltransferase (NCBI), at 4,025,632 to 4,026,795 fadA Position (kb) 4024 4025 4026Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4024.500 kb on + strandat 4024.586 kb on + strandat 4024.586 kb on + strandat 4024.586 kb on - strandat 4024.586 kb on - strandat 4024.599 kb on + strandat 4024.600 kb on + strandat 4024.600 kb on + strandat 4024.608 kb on - strandat 4024.608 kb on - strandat 4024.649 kb on + strand, within freat 4024.674 kb on - strand, within freat 4024.693 kb on + strand, within freat 4024.701 kb on - strand, within freat 4024.780 kb on + strand, within freat 4024.780 kb on + strand, within freat 4024.801 kb on - strand, within freat 4024.823 kb on + strand, within freat 4024.856 kb on - strand, within freat 4024.856 kb on - strand, within freat 4024.891 kb on + strand, within freat 4024.898 kb on - strand, within freat 4024.905 kb on + strand, within freat 4024.905 kb on + strand, within freat 4024.968 kb on + strand, within freat 4024.968 kb on + strand, within freat 4024.971 kb on + strand, within freat 4024.976 kb on - strand, within freat 4024.994 kb on - strand, within freat 4025.044 kb on + strand, within freat 4025.068 kb on + strand, within freat 4025.105 kb on + strandat 4025.132 kb on - strand, within freat 4025.208 kb on - strandat 4025.285 kb on - strandat 4025.293 kb on + strandat 4025.307 kb on - strandat 4025.307 kb on - strandat 4025.341 kb on - strandat 4025.376 kb on - strandat 4025.376 kb on - strandat 4025.410 kb on - strandat 4025.437 kb on + strandat 4025.437 kb on + strandat 4025.442 kb on - strandat 4025.442 kb on - strandat 4025.451 kb on - strandat 4025.451 kb on - strandat 4025.507 kb on + strandat 4025.600 kb on + strandat 4025.649 kb on + strandat 4025.652 kb on + strandat 4025.653 kb on + strandat 4025.660 kb on - strandat 4025.678 kb on - strandat 4025.678 kb on - strandat 4025.678 kb on - strandat 4025.758 kb on + strand, within fadAat 4025.765 kb on + strand, within fadAat 4025.765 kb on + strand, within fadAat 4025.766 kb on - strand, within fadAat 4025.766 kb on - strand, within fadAat 4025.846 kb on + strand, within fadAat 4025.907 kb on - strand, within fadAat 4025.930 kb on + strand, within fadAat 4025.930 kb on + strand, within fadAat 4025.955 kb on - strand, within fadAat 4025.955 kb on - strand, within fadAat 4025.980 kb on - strand, within fadAat 4025.980 kb on - strand, within fadAat 4025.982 kb on + strand, within fadAat 4025.987 kb on + strand, within fadAat 4026.002 kb on - strand, within fadAat 4026.047 kb on + strand, within fadAat 4026.047 kb on + strand, within fadAat 4026.075 kb on + strand, within fadAat 4026.075 kb on + strand, within fadAat 4026.075 kb on + strand, within fadAat 4026.163 kb on + strand, within fadAat 4026.163 kb on + strand, within fadAat 4026.189 kb on + strand, within fadAat 4026.198 kb on - strand, within fadAat 4026.220 kb on + strand, within fadA

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
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4,024,500 + +1.0
4,024,586 + +2.8
4,024,586 + +4.7
4,024,586 - +4.1
4,024,586 - +3.6
4,024,599 + +3.9
4,024,600 + +0.2
4,024,600 + +4.8
4,024,608 - +3.7
4,024,608 - +3.7
4,024,649 + fre b3844 0.14 +5.1
4,024,674 - fre b3844 0.18 +3.1
4,024,693 + fre b3844 0.20 +4.8
4,024,701 - fre b3844 0.22 +3.4
4,024,780 + fre b3844 0.33 +5.4
4,024,780 + fre b3844 0.33 +3.1
4,024,801 - fre b3844 0.36 +2.8
4,024,823 + fre b3844 0.39 +3.8
4,024,856 - fre b3844 0.44 +1.4
4,024,856 - fre b3844 0.44 +4.1
4,024,891 + fre b3844 0.49 +3.4
4,024,898 - fre b3844 0.50 +3.3
4,024,905 + fre b3844 0.51 +4.3
4,024,905 + fre b3844 0.51 +3.4
4,024,968 + fre b3844 0.60 +5.4
4,024,968 + fre b3844 0.60 +1.8
4,024,971 + fre b3844 0.60 +4.4
4,024,976 - fre b3844 0.61 +5.2
4,024,994 - fre b3844 0.63 +3.7
4,025,044 + fre b3844 0.70 +3.1
4,025,068 + fre b3844 0.74 +4.3
4,025,105 + +5.0
4,025,132 - fre b3844 0.83 +3.3
4,025,208 - +3.7
4,025,285 - +1.7
4,025,293 + -0.5
4,025,307 - -1.0
4,025,307 - +2.2
4,025,341 - +1.2
4,025,376 - +1.1
4,025,376 - +0.9
4,025,410 - +1.9
4,025,437 + -0.2
4,025,437 + -2.6
4,025,442 - +2.0
4,025,442 - -0.8
4,025,451 - +0.2
4,025,451 - +2.3
4,025,507 + -0.2
4,025,600 + +0.5
4,025,649 + +0.6
4,025,652 + +1.4
4,025,653 + +1.1
4,025,660 - +1.4
4,025,678 - +0.1
4,025,678 - +0.5
4,025,678 - -0.0
4,025,758 + fadA b3845 0.11 -0.2
4,025,765 + fadA b3845 0.11 -1.6
4,025,765 + fadA b3845 0.11 +2.2
4,025,766 - fadA b3845 0.12 -0.5
4,025,766 - fadA b3845 0.12 +1.8
4,025,846 + fadA b3845 0.18 -0.3
4,025,907 - fadA b3845 0.24 +2.3
4,025,930 + fadA b3845 0.26 -1.5
4,025,930 + fadA b3845 0.26 -0.5
4,025,955 - fadA b3845 0.28 +0.9
4,025,955 - fadA b3845 0.28 -2.2
4,025,980 - fadA b3845 0.30 -0.2
4,025,980 - fadA b3845 0.30 +0.2
4,025,982 + fadA b3845 0.30 +1.1
4,025,987 + fadA b3845 0.30 -2.4
4,026,002 - fadA b3845 0.32 -1.8
4,026,047 + fadA b3845 0.36 +0.5
4,026,047 + fadA b3845 0.36 +1.3
4,026,075 + fadA b3845 0.38 +0.4
4,026,075 + fadA b3845 0.38 -0.2
4,026,075 + fadA b3845 0.38 +1.7
4,026,163 + fadA b3845 0.46 -0.2
4,026,163 + fadA b3845 0.46 +4.6
4,026,189 + fadA b3845 0.48 +0.7
4,026,198 - fadA b3845 0.49 +1.4
4,026,220 + fadA b3845 0.51 -0.8

Or see this region's nucleotide sequence