Strain Fitness in Escherichia coli BW25113 around b3804

Experiment: Benzalkonium Chloride 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nthemX and hemD are separated by 21 nucleotideshemD and hemC overlap by 4 nucleotides b3803: hemX - predicted uroporphyrinogen III methylase (NCBI), at 3,985,908 to 3,987,089 hemX b3804: hemD - uroporphyrinogen-III synthetase (NCBI), at 3,987,111 to 3,987,851 hemD b3805: hemC - porphobilinogen deaminase (NCBI), at 3,987,848 to 3,988,789 hemC Position (kb) 3987 3988Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3986.129 kb on + strand, within hemXat 3986.139 kb on + strand, within hemXat 3986.139 kb on + strand, within hemXat 3986.149 kb on - strand, within hemXat 3986.150 kb on + strand, within hemXat 3986.151 kb on + strand, within hemXat 3986.151 kb on + strand, within hemXat 3986.168 kb on + strand, within hemXat 3986.168 kb on + strand, within hemXat 3986.180 kb on + strand, within hemXat 3986.180 kb on + strand, within hemXat 3986.207 kb on + strand, within hemXat 3986.207 kb on + strand, within hemXat 3986.215 kb on - strand, within hemXat 3986.215 kb on - strand, within hemXat 3986.280 kb on - strand, within hemXat 3986.356 kb on + strand, within hemXat 3986.356 kb on + strand, within hemXat 3986.385 kb on - strand, within hemXat 3986.387 kb on + strand, within hemXat 3986.432 kb on - strand, within hemXat 3986.491 kb on + strand, within hemXat 3986.491 kb on + strand, within hemXat 3986.498 kb on - strand, within hemXat 3986.510 kb on + strand, within hemXat 3986.510 kb on + strand, within hemXat 3986.512 kb on + strand, within hemXat 3986.536 kb on + strand, within hemXat 3986.536 kb on + strand, within hemXat 3986.539 kb on - strand, within hemXat 3986.564 kb on - strand, within hemXat 3986.571 kb on + strand, within hemXat 3986.571 kb on + strand, within hemXat 3986.601 kb on + strand, within hemXat 3986.609 kb on + strand, within hemXat 3986.618 kb on - strand, within hemXat 3986.620 kb on + strand, within hemXat 3986.623 kb on + strand, within hemXat 3986.627 kb on + strand, within hemXat 3986.627 kb on + strand, within hemXat 3986.628 kb on + strand, within hemXat 3986.638 kb on + strand, within hemXat 3986.638 kb on + strand, within hemXat 3986.812 kb on - strand, within hemXat 3986.846 kb on - strand, within hemXat 3986.897 kb on + strand, within hemXat 3986.897 kb on + strand, within hemXat 3986.922 kb on + strand, within hemXat 3986.948 kb on + strand, within hemXat 3986.964 kb on - strand, within hemXat 3986.964 kb on - strand, within hemXat 3987.023 kb on + strandat 3987.023 kb on + strandat 3987.027 kb on - strandat 3987.027 kb on - strandat 3987.031 kb on + strandat 3987.033 kb on + strandat 3987.048 kb on + strandat 3987.048 kb on - strandat 3987.051 kb on - strandat 3987.059 kb on - strandat 3987.101 kb on + strandat 3987.114 kb on + strandat 3988.789 kb on - strandat 3988.800 kb on - strandat 3988.800 kb on - strandat 3988.830 kb on - strandat 3988.830 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
remove
3,986,129 + hemX b3803 0.19 -1.0
3,986,139 + hemX b3803 0.20 -0.8
3,986,139 + hemX b3803 0.20 -1.6
3,986,149 - hemX b3803 0.20 +0.2
3,986,150 + hemX b3803 0.20 -0.9
3,986,151 + hemX b3803 0.21 -2.0
3,986,151 + hemX b3803 0.21 -2.4
3,986,168 + hemX b3803 0.22 -0.5
3,986,168 + hemX b3803 0.22 -0.2
3,986,180 + hemX b3803 0.23 +0.8
3,986,180 + hemX b3803 0.23 +0.2
3,986,207 + hemX b3803 0.25 -1.6
3,986,207 + hemX b3803 0.25 -1.5
3,986,215 - hemX b3803 0.26 -0.5
3,986,215 - hemX b3803 0.26 -1.1
3,986,280 - hemX b3803 0.31 -0.5
3,986,356 + hemX b3803 0.38 +0.1
3,986,356 + hemX b3803 0.38 -0.5
3,986,385 - hemX b3803 0.40 -2.3
3,986,387 + hemX b3803 0.41 -1.0
3,986,432 - hemX b3803 0.44 -0.1
3,986,491 + hemX b3803 0.49 -0.5
3,986,491 + hemX b3803 0.49 +0.2
3,986,498 - hemX b3803 0.50 -0.1
3,986,510 + hemX b3803 0.51 +0.2
3,986,510 + hemX b3803 0.51 +1.0
3,986,512 + hemX b3803 0.51 -1.8
3,986,536 + hemX b3803 0.53 -0.4
3,986,536 + hemX b3803 0.53 -0.2
3,986,539 - hemX b3803 0.53 -2.2
3,986,564 - hemX b3803 0.55 -2.0
3,986,571 + hemX b3803 0.56 -1.8
3,986,571 + hemX b3803 0.56 +1.0
3,986,601 + hemX b3803 0.59 +0.6
3,986,609 + hemX b3803 0.59 -1.0
3,986,618 - hemX b3803 0.60 +0.4
3,986,620 + hemX b3803 0.60 -0.2
3,986,623 + hemX b3803 0.60 -0.6
3,986,627 + hemX b3803 0.61 -1.4
3,986,627 + hemX b3803 0.61 -0.5
3,986,628 + hemX b3803 0.61 -0.5
3,986,638 + hemX b3803 0.62 +0.1
3,986,638 + hemX b3803 0.62 +0.8
3,986,812 - hemX b3803 0.76 +1.0
3,986,846 - hemX b3803 0.79 -1.8
3,986,897 + hemX b3803 0.84 +0.0
3,986,897 + hemX b3803 0.84 -0.8
3,986,922 + hemX b3803 0.86 -1.6
3,986,948 + hemX b3803 0.88 -1.4
3,986,964 - hemX b3803 0.89 -2.0
3,986,964 - hemX b3803 0.89 +1.8
3,987,023 + +0.0
3,987,023 + -1.1
3,987,027 - +2.2
3,987,027 - +0.5
3,987,031 + +1.3
3,987,033 + -0.4
3,987,048 + -1.0
3,987,048 - -1.6
3,987,051 - -1.3
3,987,059 - +1.2
3,987,101 + +1.6
3,987,114 + +0.9
3,988,789 - +1.2
3,988,800 - -3.3
3,988,800 - -0.3
3,988,830 - -1.2
3,988,830 - +1.5

Or see this region's nucleotide sequence