Strain Fitness in Escherichia coli BW25113 around b3729

Experiment: Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpstS and glmS are separated by 313 nucleotidesglmS and glmU are separated by 161 nucleotides b3728: pstS - phosphate transporter subunit (NCBI), at 3,908,508 to 3,909,548 pstS b3729: glmS - D-fructose-6-phosphate amidotransferase (NCBI), at 3,909,862 to 3,911,691 glmS b3730: glmU - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase (NCBI), at 3,911,853 to 3,913,223 glmU Position (kb) 3909 3910 3911 3912Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3908.891 kb on - strand, within pstSat 3908.919 kb on - strand, within pstSat 3908.973 kb on + strand, within pstSat 3908.997 kb on - strand, within pstSat 3909.029 kb on + strand, within pstSat 3909.095 kb on - strand, within pstSat 3909.155 kb on + strand, within pstSat 3909.161 kb on + strand, within pstSat 3909.231 kb on - strand, within pstSat 3909.231 kb on - strand, within pstSat 3909.439 kb on - strand, within pstSat 3909.445 kb on - strandat 3909.480 kb on + strandat 3909.480 kb on + strandat 3909.504 kb on - strandat 3909.537 kb on - strandat 3909.553 kb on - strandat 3909.562 kb on - strandat 3909.566 kb on + strandat 3909.566 kb on + strandat 3909.608 kb on - strandat 3909.621 kb on + strandat 3909.763 kb on - strandat 3909.791 kb on + strandat 3909.847 kb on - strandat 3909.847 kb on - strandat 3909.857 kb on - strandat 3911.718 kb on + strandat 3911.759 kb on + strandat 3911.768 kb on - strandat 3911.804 kb on + strandat 3911.813 kb on - strandat 3911.813 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
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3,908,891 - pstS b3728 0.37 -1.3
3,908,919 - pstS b3728 0.39 -2.5
3,908,973 + pstS b3728 0.45 -0.1
3,908,997 - pstS b3728 0.47 -2.0
3,909,029 + pstS b3728 0.50 -0.4
3,909,095 - pstS b3728 0.56 -0.1
3,909,155 + pstS b3728 0.62 -1.1
3,909,161 + pstS b3728 0.63 -0.1
3,909,231 - pstS b3728 0.69 -0.9
3,909,231 - pstS b3728 0.69 -0.8
3,909,439 - pstS b3728 0.89 +0.3
3,909,445 - -1.9
3,909,480 + +0.3
3,909,480 + -1.1
3,909,504 - +0.9
3,909,537 - -0.3
3,909,553 - -0.1
3,909,562 - +0.3
3,909,566 + -2.1
3,909,566 + -2.8
3,909,608 - -2.3
3,909,621 + -1.7
3,909,763 - +1.9
3,909,791 + -0.4
3,909,847 - -1.1
3,909,847 - +0.7
3,909,857 - +0.8
3,911,718 + +1.6
3,911,759 + -0.1
3,911,768 - +1.8
3,911,804 + +0.5
3,911,813 - +0.3
3,911,813 - +1.1

Or see this region's nucleotide sequence