Strain Fitness in Escherichia coli BW25113 around b3677

Experiment: Benzalkonium Chloride 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzalkonium Chloride 0.004 mg/ml
3,853,445	+	yidF	b3674	0.62	+0.7
3,853,445	+	yidF	b3674	0.62	+0.2
3,853,445	+	yidF	b3674	0.62	+1.3
3,853,450	+	yidF	b3674	0.63	+1.9
3,853,453	-	yidF	b3674	0.63	+0.9
3,853,453	-	yidF	b3674	0.63	+4.4
3,853,453	-	yidF	b3674	0.63	+0.9
3,853,501	+	yidF	b3674	0.73	-0.8
3,853,501	+	yidF	b3674	0.73	+1.4
3,853,506	+	yidF	b3674	0.74	+1.5
3,853,511	+	yidF	b3674	0.75	+3.1
3,853,511	+	yidF	b3674	0.75	-0.9
3,853,511	+	yidF	b3674	0.75	+1.1
3,853,597	-				+1.4
3,853,597	-				+2.4
3,853,612	+				-0.1
3,853,612	+				-0.6
3,853,666	+				-0.8
3,853,687	+	yidG	b3675	0.15	+1.1
3,853,695	+	yidG	b3675	0.18	-1.0
3,853,697	+	yidG	b3675	0.18	+0.4
3,853,703	-	yidG	b3675	0.20	+1.1
3,853,727	+	yidG	b3675	0.26	-1.4
3,853,727	+	yidG	b3675	0.26	-3.1
3,853,781	-	yidG	b3675	0.41	+3.1
3,853,781	-	yidG	b3675	0.41	+0.3
3,853,796	-	yidG	b3675	0.45	+3.6
3,853,796	-	yidG	b3675	0.45	-1.1
3,853,819	-	yidG	b3675	0.52	+0.3
3,853,869	-	yidG	b3675	0.66	+2.0
3,853,904	+	yidG	b3675	0.75	+0.3
3,853,904	+	yidG	b3675	0.75	+0.7
3,853,914	+	yidG	b3675	0.78	-0.1
3,853,919	+	yidG	b3675	0.79	-0.5
3,853,933	-	yidG	b3675	0.83	+2.4
3,853,933	-	yidG	b3675	0.83	+0.1
3,853,959	-				+1.5
3,853,959	-				+1.9
3,853,993	+				+0.4
3,854,005	-				+1.4
3,854,011	-				+0.8
3,854,011	-				+0.9
3,854,053	-	yidH	b3676	0.20	+0.3
3,854,062	+	yidH	b3676	0.23	+1.1
3,854,062	+	yidH	b3676	0.23	-0.9
3,854,062	+	yidH	b3676	0.23	+0.9
3,854,080	+	yidH	b3676	0.28	+2.9
3,854,080	+	yidH	b3676	0.28	+1.7
3,854,129	-	yidH	b3676	0.42	+1.5
3,854,214	-	yidH	b3676	0.66	+3.9
3,854,214	-	yidH	b3676	0.66	+2.9
3,854,251	-	yidH	b3676	0.77	-0.7
3,854,251	-	yidH	b3676	0.77	-0.3
3,854,305	+				-0.7
3,854,356	+				-1.3
3,854,357	+				+2.2
3,854,357	+				+0.6
3,854,445	+				+0.9
3,854,445	-				+0.5
3,854,448	-				-0.9
3,854,448	-				+0.4
3,854,450	-				-1.6
3,854,562	+	yidI	b3677	0.28	+0.4
3,854,562	+	yidI	b3677	0.28	-0.8
3,854,575	-	yidI	b3677	0.30	-0.7
3,854,595	-	yidI	b3677	0.35	-2.2
3,854,693	-	yidI	b3677	0.57	-0.1
3,854,705	-	yidI	b3677	0.59	-1.4
3,854,705	-	yidI	b3677	0.59	-0.2
3,854,708	-	yidI	b3677	0.60	+1.0
3,854,743	-	yidI	b3677	0.68	+1.9
3,854,770	+	yidI	b3677	0.74	+0.9
3,854,803	-	yidI	b3677	0.81	-0.4
3,854,803	-	yidI	b3677	0.81	-0.9
3,854,889	-				-1.3
3,854,889	-				+0.9
3,854,908	-				-0.9
3,854,932	+				-0.4
3,854,997	+				-1.4
3,855,018	+				+3.1
3,855,018	+				-0.7
3,855,049	-				+2.4
3,855,053	-				-1.1
3,855,053	-				+3.5
3,855,064	-				+1.3
3,855,064	-				-0.9
3,855,072	-				-0.7
3,855,072	-				+0.4
3,855,132	-	yidJ	b3678	0.13	-0.4
3,855,265	-	yidJ	b3678	0.22	+0.5
3,855,265	-	yidJ	b3678	0.22	-0.4
3,855,307	-	yidJ	b3678	0.25	+0.4
3,855,327	-	yidJ	b3678	0.26	-2.0
3,855,399	-	yidJ	b3678	0.31	-0.2
3,855,450	+	yidJ	b3678	0.35	-2.7
3,855,475	-	yidJ	b3678	0.36	+1.9
3,855,548	+	yidJ	b3678	0.41	+0.5
3,855,556	-	yidJ	b3678	0.42	+2.1
3,855,582	+	yidJ	b3678	0.43	+0.2
3,855,681	-	yidJ	b3678	0.50	+0.3
3,855,695	-	yidJ	b3678	0.51	+1.3
3,855,706	-	yidJ	b3678	0.52	+1.0
3,855,718	+	yidJ	b3678	0.52	+0.3
3,855,718	+	yidJ	b3678	0.52	-2.0
3,855,791	-	yidJ	b3678	0.57	-0.4
3,855,791	-	yidJ	b3678	0.57	+1.8
3,855,864	-	yidJ	b3678	0.62	+0.9
3,855,883	-	yidJ	b3678	0.64	+0.9
3,855,883	-	yidJ	b3678	0.64	-0.9