Strain Fitness in Escherichia coli BW25113 around b3434
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,572,953 | - | +1.1 | |||
3,572,953 | - | +0.7 | |||
3,572,958 | - | +0.3 | |||
3,572,961 | + | +1.1 | |||
3,572,970 | - | -0.9 | |||
3,573,020 | + | -1.7 | |||
3,573,030 | - | -2.4 | |||
3,573,033 | - | -0.7 | |||
3,573,033 | - | -1.8 | |||
3,573,034 | + | -0.7 | |||
3,573,038 | + | +0.3 | |||
3,573,056 | + | -0.7 | |||
3,573,159 | - | yhgN | b3434 | 0.11 | +0.3 |
3,573,159 | - | yhgN | b3434 | 0.11 | -2.7 |
3,573,180 | - | yhgN | b3434 | 0.14 | -1.2 |
3,573,212 | - | yhgN | b3434 | 0.20 | +1.2 |
3,573,237 | + | yhgN | b3434 | 0.24 | -0.5 |
3,573,237 | + | yhgN | b3434 | 0.24 | +0.1 |
3,573,260 | - | yhgN | b3434 | 0.28 | -0.6 |
3,573,305 | - | yhgN | b3434 | 0.36 | -0.7 |
3,573,305 | - | yhgN | b3434 | 0.36 | -0.2 |
3,573,313 | + | yhgN | b3434 | 0.37 | -0.6 |
3,573,323 | + | yhgN | b3434 | 0.39 | -1.8 |
3,573,373 | + | yhgN | b3434 | 0.47 | -1.7 |
3,573,418 | - | yhgN | b3434 | 0.55 | +4.4 |
3,573,468 | + | yhgN | b3434 | 0.63 | +0.7 |
3,573,468 | + | yhgN | b3434 | 0.63 | +0.1 |
3,573,469 | - | yhgN | b3434 | 0.63 | +1.1 |
3,573,471 | + | yhgN | b3434 | 0.63 | -0.7 |
3,573,488 | - | yhgN | b3434 | 0.66 | +1.6 |
3,573,528 | - | yhgN | b3434 | 0.73 | +1.3 |
3,573,569 | + | yhgN | b3434 | 0.80 | +0.1 |
3,573,569 | + | yhgN | b3434 | 0.80 | -0.3 |
3,573,582 | + | yhgN | b3434 | 0.82 | -0.6 |
3,573,595 | - | yhgN | b3434 | 0.84 | +0.1 |
3,573,595 | - | yhgN | b3434 | 0.84 | -0.3 |
3,573,643 | + | +0.7 | |||
3,573,643 | + | -2.3 | |||
3,573,652 | + | +2.1 | |||
3,573,683 | + | -2.9 | |||
3,573,708 | + | +0.4 | |||
3,573,710 | + | +1.4 | |||
3,573,758 | - | +1.3 | |||
3,573,782 | + | +1.5 | |||
3,573,810 | - | +2.1 | |||
3,573,848 | - | -0.3 | |||
3,573,848 | - | -0.7 | |||
3,573,957 | - | gntU | b4476 | 0.16 | +1.5 |
3,573,967 | - | gntU | b4476 | 0.17 | -0.6 |
3,574,017 | + | gntU | b4476 | 0.20 | +1.1 |
3,574,017 | + | gntU | b4476 | 0.20 | +1.1 |
3,574,017 | + | gntU | b4476 | 0.20 | -1.8 |
3,574,019 | + | gntU | b4476 | 0.21 | -2.2 |
3,574,019 | + | gntU | b4476 | 0.21 | -0.8 |
3,574,042 | - | gntU | b4476 | 0.22 | +0.3 |
3,574,107 | + | gntU | b4476 | 0.27 | +0.7 |
3,574,108 | - | gntU | b4476 | 0.27 | +1.2 |
3,574,133 | - | gntU | b4476 | 0.29 | +0.2 |
3,574,154 | - | gntU | b4476 | 0.31 | +2.7 |
3,574,154 | - | gntU | b4476 | 0.31 | +0.1 |
3,574,187 | + | gntU | b4476 | 0.33 | -0.4 |
3,574,274 | + | gntU | b4476 | 0.40 | +0.9 |
3,574,282 | + | gntU | b4476 | 0.40 | +0.6 |
3,574,284 | + | gntU | b4476 | 0.40 | +2.1 |
3,574,326 | - | gntU | b4476 | 0.43 | +0.2 |
3,574,356 | + | gntU | b4476 | 0.46 | +1.5 |
3,574,376 | + | gntU | b4476 | 0.47 | -1.5 |
3,574,428 | + | gntU | b4476 | 0.51 | +1.5 |
3,574,428 | + | gntU | b4476 | 0.51 | +1.3 |
3,574,449 | - | gntU | b4476 | 0.53 | -1.7 |
3,574,466 | + | gntU | b4476 | 0.54 | +0.1 |
3,574,466 | + | gntU | b4476 | 0.54 | +0.3 |
3,574,487 | + | gntU | b4476 | 0.55 | +0.7 |
3,574,487 | + | gntU | b4476 | 0.55 | +0.8 |
3,574,490 | - | gntU | b4476 | 0.56 | -0.2 |
3,574,490 | - | gntU | b4476 | 0.56 | -0.7 |
3,574,502 | - | gntU | b4476 | 0.57 | +2.7 |
3,574,502 | - | gntU | b4476 | 0.57 | +2.4 |
3,574,528 | + | gntU | b4476 | 0.58 | -0.9 |
3,574,528 | + | gntU | b4476 | 0.58 | +1.2 |
3,574,547 | + | gntU | b4476 | 0.60 | +0.9 |
3,574,595 | + | gntU | b4476 | 0.63 | +2.1 |
3,574,598 | - | gntU | b4476 | 0.64 | +1.0 |
Or see this region's nucleotide sequence