Strain Fitness in Escherichia coli BW25113 around b3057
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,201,212 | + | +0.4 | |||
3,201,294 | + | -2.2 | |||
3,201,343 | - | +1.0 | |||
3,201,352 | - | +0.5 | |||
3,201,439 | + | bacA | b3057 | 0.13 | +1.5 |
3,201,489 | - | bacA | b3057 | 0.19 | +2.3 |
3,201,489 | - | bacA | b3057 | 0.19 | -1.2 |
3,201,512 | + | bacA | b3057 | 0.22 | +2.2 |
3,201,512 | + | bacA | b3057 | 0.22 | +2.4 |
3,201,537 | - | bacA | b3057 | 0.25 | -2.1 |
3,201,537 | - | bacA | b3057 | 0.25 | +0.1 |
3,201,640 | + | bacA | b3057 | 0.37 | +1.1 |
3,201,640 | + | bacA | b3057 | 0.37 | -1.2 |
3,201,696 | + | bacA | b3057 | 0.44 | -0.9 |
3,201,707 | - | bacA | b3057 | 0.46 | -2.5 |
3,201,707 | - | bacA | b3057 | 0.46 | +0.2 |
3,201,765 | - | bacA | b3057 | 0.53 | -1.8 |
3,201,880 | + | bacA | b3057 | 0.67 | +3.3 |
3,201,970 | - | bacA | b3057 | 0.78 | +2.1 |
3,201,978 | - | bacA | b3057 | 0.79 | +0.4 |
3,201,995 | - | bacA | b3057 | 0.81 | +2.1 |
3,202,065 | - | bacA | b3057 | 0.89 | +0.4 |
3,202,069 | - | bacA | b3057 | 0.90 | -0.8 |
3,202,069 | - | bacA | b3057 | 0.90 | -0.6 |
3,202,081 | - | -0.2 | |||
3,202,081 | - | -1.4 | |||
3,202,136 | + | +0.5 | |||
3,202,136 | + | +2.6 | |||
3,202,139 | + | +1.4 | |||
3,202,187 | + | -2.2 | |||
3,202,219 | - | -1.8 | |||
3,202,602 | - | +1.1 | |||
3,202,644 | - | -0.5 | |||
3,202,712 | + | -0.4 | |||
3,202,878 | + | ygiH | b3059 | 0.26 | +0.7 |
3,202,878 | + | ygiH | b3059 | 0.26 | +2.6 |
3,202,968 | - | ygiH | b3059 | 0.41 | -0.4 |
3,203,057 | + | ygiH | b3059 | 0.55 | -1.4 |
3,203,072 | - | ygiH | b3059 | 0.58 | -1.4 |
3,203,128 | - | ygiH | b3059 | 0.67 | +1.0 |
3,203,143 | + | ygiH | b3059 | 0.69 | -0.8 |
Or see this region's nucleotide sequence