Strain Fitness in Escherichia coli BW25113 around b2957
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,096,846 | + | yggM | b2956 | 0.26 | -1.5 |
3,096,847 | - | yggM | b2956 | 0.26 | +1.8 |
3,096,858 | + | yggM | b2956 | 0.28 | +0.5 |
3,096,866 | - | yggM | b2956 | 0.28 | -0.3 |
3,096,866 | - | yggM | b2956 | 0.28 | +1.1 |
3,096,899 | - | yggM | b2956 | 0.32 | +1.2 |
3,097,084 | - | yggM | b2956 | 0.50 | +1.6 |
3,097,107 | - | yggM | b2956 | 0.52 | -1.8 |
3,097,207 | - | yggM | b2956 | 0.62 | +0.5 |
3,097,252 | + | yggM | b2956 | 0.67 | +0.6 |
3,097,252 | + | yggM | b2956 | 0.67 | -1.3 |
3,097,420 | - | yggM | b2956 | 0.83 | -0.7 |
3,097,420 | - | yggM | b2956 | 0.83 | +1.0 |
3,097,534 | - | +0.7 | |||
3,097,548 | + | -3.0 | |||
3,097,549 | - | +0.3 | |||
3,097,557 | + | +0.0 | |||
3,097,560 | - | -0.3 | |||
3,097,560 | - | +2.3 | |||
3,097,567 | - | +1.1 | |||
3,097,660 | + | -1.5 | |||
3,097,695 | - | -2.0 | |||
3,097,695 | - | -1.0 | |||
3,097,702 | + | +0.8 | |||
3,097,702 | + | +1.7 | |||
3,097,710 | - | +0.0 | |||
3,097,796 | + | -1.0 | |||
3,097,951 | + | ansB | b2957 | 0.24 | -1.8 |
3,097,958 | - | ansB | b2957 | 0.24 | -0.1 |
3,098,021 | - | ansB | b2957 | 0.30 | -0.7 |
3,098,063 | + | ansB | b2957 | 0.34 | +0.6 |
3,098,114 | + | ansB | b2957 | 0.39 | +0.1 |
3,098,133 | - | ansB | b2957 | 0.41 | +2.9 |
3,098,157 | + | ansB | b2957 | 0.43 | -1.0 |
3,098,157 | + | ansB | b2957 | 0.43 | -1.8 |
3,098,275 | - | ansB | b2957 | 0.55 | +0.5 |
3,098,275 | - | ansB | b2957 | 0.55 | -1.5 |
3,098,288 | - | ansB | b2957 | 0.56 | -0.7 |
3,098,288 | - | ansB | b2957 | 0.56 | +0.4 |
3,098,411 | - | ansB | b2957 | 0.68 | -0.3 |
3,098,411 | - | ansB | b2957 | 0.68 | -1.5 |
3,098,420 | - | ansB | b2957 | 0.68 | +0.3 |
3,098,429 | - | ansB | b2957 | 0.69 | +1.6 |
3,098,493 | - | ansB | b2957 | 0.75 | -2.5 |
3,098,500 | + | ansB | b2957 | 0.76 | -1.3 |
3,098,500 | + | ansB | b2957 | 0.76 | +2.3 |
3,098,536 | + | ansB | b2957 | 0.79 | +0.5 |
3,098,631 | + | ansB | b2957 | 0.89 | +1.6 |
3,098,631 | - | ansB | b2957 | 0.89 | +2.1 |
3,098,631 | - | ansB | b2957 | 0.89 | +1.1 |
3,098,647 | - | -1.3 | |||
3,098,647 | - | -2.3 | |||
3,098,684 | + | +0.3 | |||
3,098,706 | - | +0.5 | |||
3,098,706 | - | +1.2 | |||
3,099,052 | + | yggN | b2958 | 0.17 | +0.4 |
3,099,062 | + | yggN | b2958 | 0.19 | -2.1 |
3,099,190 | + | yggN | b2958 | 0.37 | +1.0 |
3,099,216 | + | yggN | b2958 | 0.40 | +0.4 |
3,099,216 | + | yggN | b2958 | 0.40 | -0.1 |
3,099,347 | + | yggN | b2958 | 0.58 | -1.7 |
3,099,350 | - | yggN | b2958 | 0.59 | -0.7 |
3,099,350 | - | yggN | b2958 | 0.59 | -1.5 |
3,099,366 | + | yggN | b2958 | 0.61 | -1.0 |
3,099,366 | + | yggN | b2958 | 0.61 | +1.3 |
3,099,482 | - | yggN | b2958 | 0.77 | -2.6 |
3,099,484 | - | yggN | b2958 | 0.78 | -1.8 |
3,099,533 | + | yggN | b2958 | 0.84 | -0.5 |
3,099,564 | + | yggN | b2958 | 0.89 | +0.3 |
3,099,564 | + | yggN | b2958 | 0.89 | +1.5 |
3,099,564 | + | yggN | b2958 | 0.89 | -0.5 |
3,099,569 | + | yggN | b2958 | 0.89 | -0.3 |
Or see this region's nucleotide sequence