Strain Fitness in Escherichia coli BW25113 around b2779

Experiment: Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyqcG and ygcG are separated by 13 nucleotidesygcG and eno are separated by 59 nucleotideseno and pyrG are separated by 87 nucleotides b4682: yqcG - expressed protein (RefSeq), at 2,903,579 to 2,903,719 yqcG b2778: ygcG - orf, hypothetical protein (VIMSS), at 2,903,733 to 2,904,605 ygcG b2779: eno - phosphopyruvate hydratase (NCBI), at 2,904,665 to 2,905,963 eno b2780: pyrG - CTP synthetase (NCBI), at 2,906,051 to 2,907,688 pyrG Position (kb) 2904 2905 2906Strain fitness (log2 ratio) -2 -1 0 1 2at 2904.015 kb on - strand, within ygcGat 2904.015 kb on - strand, within ygcGat 2904.017 kb on + strand, within ygcGat 2904.017 kb on + strand, within ygcGat 2904.017 kb on - strand, within ygcGat 2904.027 kb on - strand, within ygcGat 2904.045 kb on + strand, within ygcGat 2904.061 kb on + strand, within ygcGat 2904.107 kb on + strand, within ygcGat 2904.113 kb on + strand, within ygcGat 2904.167 kb on + strand, within ygcGat 2904.205 kb on + strand, within ygcGat 2904.209 kb on + strand, within ygcGat 2904.439 kb on - strand, within ygcGat 2904.485 kb on - strand, within ygcGat 2904.485 kb on - strand, within ygcGat 2904.485 kb on - strand, within ygcGat 2904.492 kb on + strand, within ygcGat 2904.503 kb on - strand, within ygcGat 2904.503 kb on - strand, within ygcGat 2904.513 kb on + strand, within ygcGat 2904.525 kb on + strandat 2904.528 kb on + strandat 2904.573 kb on + strandat 2904.603 kb on - strandat 2904.665 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
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2,904,015 - ygcG b2778 0.32 -2.5
2,904,015 - ygcG b2778 0.32 -1.5
2,904,017 + ygcG b2778 0.33 -0.7
2,904,017 + ygcG b2778 0.33 +0.3
2,904,017 - ygcG b2778 0.33 -2.0
2,904,027 - ygcG b2778 0.34 -1.3
2,904,045 + ygcG b2778 0.36 -0.8
2,904,061 + ygcG b2778 0.38 -1.4
2,904,107 + ygcG b2778 0.43 +1.9
2,904,113 + ygcG b2778 0.44 +0.1
2,904,167 + ygcG b2778 0.50 +1.2
2,904,205 + ygcG b2778 0.54 +1.7
2,904,209 + ygcG b2778 0.55 -0.5
2,904,439 - ygcG b2778 0.81 +0.1
2,904,485 - ygcG b2778 0.86 -0.2
2,904,485 - ygcG b2778 0.86 +0.3
2,904,485 - ygcG b2778 0.86 +2.0
2,904,492 + ygcG b2778 0.87 -0.2
2,904,503 - ygcG b2778 0.88 -0.7
2,904,503 - ygcG b2778 0.88 +0.3
2,904,513 + ygcG b2778 0.89 -2.5
2,904,525 + -1.0
2,904,528 + +0.3
2,904,573 + +1.1
2,904,603 - -0.1
2,904,665 - -0.7

Or see this region's nucleotide sequence