Strain Fitness in Escherichia coli BW25113 around b2568

Experiment: Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntera and rnc overlap by 4 nucleotidesrnc and lepB are separated by 271 nucleotideslepB and lepA are separated by 15 nucleotides b2566: era - GTP-binding protein Era (NCBI), at 2,700,503 to 2,701,408 era b2567: rnc - ribonuclease III (NCBI), at 2,701,405 to 2,702,085 rnc b2568: lepB - leader peptidase (signal peptidase I) (NCBI), at 2,702,357 to 2,703,331 lepB b2569: lepA - GTP-binding protein LepA (NCBI), at 2,703,347 to 2,705,146 lepA Position (kb) 2702 2703 2704Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2701.692 kb on - strand, within rncat 2702.009 kb on - strand, within rncat 2702.100 kb on - strandat 2702.134 kb on - strandat 2702.144 kb on - strandat 2702.144 kb on - strandat 2702.147 kb on - strandat 2702.147 kb on - strandat 2702.164 kb on - strandat 2702.164 kb on - strandat 2702.191 kb on - strandat 2702.191 kb on - strandat 2702.191 kb on - strandat 2702.229 kb on - strandat 2702.303 kb on + strandat 2702.368 kb on + strandat 2702.368 kb on + strandat 2702.439 kb on - strandat 2702.448 kb on - strandat 2702.448 kb on - strandat 2703.342 kb on - strandat 2703.342 kb on - strandat 2703.413 kb on - strandat 2703.702 kb on - strand, within lepAat 2703.911 kb on - strand, within lepAat 2703.930 kb on - strand, within lepAat 2703.932 kb on - strand, within lepAat 2704.000 kb on - strand, within lepAat 2704.055 kb on + strand, within lepAat 2704.089 kb on + strand, within lepAat 2704.109 kb on - strand, within lepAat 2704.109 kb on - strand, within lepAat 2704.110 kb on - strand, within lepAat 2704.169 kb on + strand, within lepAat 2704.194 kb on - strand, within lepAat 2704.250 kb on - strand, within lepA

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
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2,701,692 - rnc b2567 0.42 -1.5
2,702,009 - rnc b2567 0.89 -1.2
2,702,100 - -0.2
2,702,134 - -1.5
2,702,144 - -0.1
2,702,144 - -2.2
2,702,147 - -1.0
2,702,147 - -1.4
2,702,164 - +0.9
2,702,164 - -0.7
2,702,191 - +0.0
2,702,191 - -2.7
2,702,191 - -1.2
2,702,229 - -1.5
2,702,303 + -0.6
2,702,368 + -1.2
2,702,368 + -0.8
2,702,439 - -2.1
2,702,448 - -1.0
2,702,448 - -1.0
2,703,342 - +1.6
2,703,342 - -0.1
2,703,413 - +0.5
2,703,702 - lepA b2569 0.20 +4.3
2,703,911 - lepA b2569 0.31 +3.5
2,703,930 - lepA b2569 0.32 +1.9
2,703,932 - lepA b2569 0.33 +3.5
2,704,000 - lepA b2569 0.36 +1.0
2,704,055 + lepA b2569 0.39 +0.3
2,704,089 + lepA b2569 0.41 +0.3
2,704,109 - lepA b2569 0.42 +4.3
2,704,109 - lepA b2569 0.42 +3.7
2,704,110 - lepA b2569 0.42 +3.4
2,704,169 + lepA b2569 0.46 -0.2
2,704,194 - lepA b2569 0.47 +3.7
2,704,250 - lepA b2569 0.50 +3.4

Or see this region's nucleotide sequence