Strain Fitness in Escherichia coli BW25113 around b2560

Experiment: Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmltF and tadA overlap by 4 nucleotidestadA and yfhB are separated by 57 nucleotidesyfhB and yfhH are separated by 208 nucleotides b2558: mltF - predicted periplasmic binding protein/transglycosylase (RefSeq), at 2,693,823 to 2,695,379 mltF b2559: tadA - tRNA-specific adenosine deaminase (RefSeq), at 2,695,376 to 2,695,879 tadA b2560: yfhB - orf, hypothetical protein (VIMSS), at 2,695,937 to 2,696,572 yfhB b2561: yfhH - orf, hypothetical protein (VIMSS), at 2,696,781 to 2,697,629 yfhH Position (kb) 2695 2696 2697Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2694.969 kb on + strand, within mltFat 2694.971 kb on + strand, within mltFat 2694.976 kb on + strand, within mltFat 2695.086 kb on + strand, within mltFat 2695.109 kb on + strand, within mltFat 2695.125 kb on + strand, within mltFat 2695.138 kb on - strand, within mltFat 2695.203 kb on - strand, within mltFat 2695.203 kb on - strand, within mltFat 2695.252 kb on + strandat 2695.252 kb on + strandat 2695.256 kb on - strandat 2695.260 kb on - strandat 2695.328 kb on + strandat 2695.365 kb on - strandat 2695.945 kb on - strandat 2695.945 kb on - strandat 2695.966 kb on + strandat 2695.966 kb on + strandat 2695.968 kb on + strandat 2695.968 kb on + strandat 2696.004 kb on + strand, within yfhBat 2696.004 kb on + strand, within yfhBat 2696.014 kb on + strand, within yfhBat 2696.014 kb on + strand, within yfhBat 2696.024 kb on + strand, within yfhBat 2696.044 kb on + strand, within yfhBat 2696.044 kb on - strand, within yfhBat 2696.050 kb on - strand, within yfhBat 2696.077 kb on - strand, within yfhBat 2696.077 kb on - strand, within yfhBat 2696.089 kb on + strand, within yfhBat 2696.089 kb on + strand, within yfhBat 2696.164 kb on - strand, within yfhBat 2696.477 kb on + strand, within yfhBat 2696.479 kb on + strand, within yfhBat 2696.479 kb on + strand, within yfhBat 2696.526 kb on + strandat 2696.543 kb on - strandat 2696.543 kb on - strandat 2696.571 kb on + strandat 2696.579 kb on - strandat 2696.582 kb on - strandat 2696.673 kb on - strandat 2696.673 kb on - strandat 2696.739 kb on + strandat 2696.828 kb on + strandat 2696.830 kb on + strandat 2696.916 kb on - strand, within yfhHat 2697.042 kb on - strand, within yfhHat 2697.102 kb on + strand, within yfhHat 2697.162 kb on + strand, within yfhHat 2697.181 kb on + strand, within yfhHat 2697.290 kb on + strand, within yfhHat 2697.290 kb on + strand, within yfhHat 2697.290 kb on + strand, within yfhHat 2697.320 kb on - strand, within yfhHat 2697.326 kb on + strand, within yfhHat 2697.326 kb on + strand, within yfhHat 2697.334 kb on - strand, within yfhHat 2697.355 kb on + strand, within yfhHat 2697.446 kb on + strand, within yfhHat 2697.472 kb on - strand, within yfhHat 2697.514 kb on + strand, within yfhH

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
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2,694,969 + mltF b2558 0.74 -3.5
2,694,971 + mltF b2558 0.74 -0.6
2,694,976 + mltF b2558 0.74 +0.2
2,695,086 + mltF b2558 0.81 -0.5
2,695,109 + mltF b2558 0.83 -1.6
2,695,125 + mltF b2558 0.84 -1.4
2,695,138 - mltF b2558 0.84 -3.1
2,695,203 - mltF b2558 0.89 -0.5
2,695,203 - mltF b2558 0.89 +0.5
2,695,252 + -0.2
2,695,252 + -0.6
2,695,256 - +1.2
2,695,260 - -1.1
2,695,328 + -0.6
2,695,365 - -0.9
2,695,945 - +1.1
2,695,945 - -1.4
2,695,966 + -1.3
2,695,966 + -0.0
2,695,968 + +1.0
2,695,968 + +1.4
2,696,004 + yfhB b2560 0.11 +1.0
2,696,004 + yfhB b2560 0.11 +2.1
2,696,014 + yfhB b2560 0.12 +0.3
2,696,014 + yfhB b2560 0.12 +0.0
2,696,024 + yfhB b2560 0.14 -0.9
2,696,044 + yfhB b2560 0.17 -1.7
2,696,044 - yfhB b2560 0.17 -2.3
2,696,050 - yfhB b2560 0.18 +1.1
2,696,077 - yfhB b2560 0.22 -1.6
2,696,077 - yfhB b2560 0.22 -2.5
2,696,089 + yfhB b2560 0.24 -2.0
2,696,089 + yfhB b2560 0.24 +0.5
2,696,164 - yfhB b2560 0.36 -0.5
2,696,477 + yfhB b2560 0.85 +0.4
2,696,479 + yfhB b2560 0.85 +2.2
2,696,479 + yfhB b2560 0.85 -1.2
2,696,526 + +1.4
2,696,543 - -2.3
2,696,543 - +0.4
2,696,571 + +1.9
2,696,579 - +1.4
2,696,582 - -1.4
2,696,673 - -2.9
2,696,673 - +3.2
2,696,739 + -1.5
2,696,828 + +1.7
2,696,830 + -1.7
2,696,916 - yfhH b2561 0.16 -0.1
2,697,042 - yfhH b2561 0.31 -1.2
2,697,102 + yfhH b2561 0.38 +0.4
2,697,162 + yfhH b2561 0.45 -1.4
2,697,181 + yfhH b2561 0.47 +0.3
2,697,290 + yfhH b2561 0.60 +1.0
2,697,290 + yfhH b2561 0.60 -0.2
2,697,290 + yfhH b2561 0.60 -1.4
2,697,320 - yfhH b2561 0.63 +2.6
2,697,326 + yfhH b2561 0.64 -1.9
2,697,326 + yfhH b2561 0.64 -0.7
2,697,334 - yfhH b2561 0.65 +0.5
2,697,355 + yfhH b2561 0.68 -1.6
2,697,446 + yfhH b2561 0.78 +0.5
2,697,472 - yfhH b2561 0.81 +0.4
2,697,514 + yfhH b2561 0.86 -0.2

Or see this region's nucleotide sequence